Table 2. Strains of Japanese encephalitis virus reported on GenBank and used in phylogenetic analysis of envelope protein coding genes.
| Genotype | Strain | Source of Virus | Geographical Origin | Collection Date | Accession No. |
| 1 | SC04-15 | Culex tritaeniorhynchus | China | 2006b | DQ404091 |
| 1 | LX10P-09 | Cerebrospinal fluid | China | 2009 | HM204528 |
| 1 | LY5P-09 | Cerebrospinal fluid | China | 2009 | HM204530 |
| 1 | XP174M0-08 | Culex tritaeniorhynchus | China | 2008 | HM204527 |
| 1 | B2239 | Pig | Thailand | 1984 | JEU70391 |
| 1 | P19Br | Human | Thailand | 1982 | JEU70416 |
| 1 | M859 | Mosquito | Cambodia | 1967 | JEU70410 |
| 1 | K01-JB | Mosquito | Republic of Korea | 2001 | FJ938221 |
| 1 | K96A07 | Mosquito | Republic of Korea | 1996 | FJ938219 |
| 2 | JKT1749 | Mosquito | Indonesia | 1979 | JEU70405 |
| 2 | WTP-70-22 | Mosquito | Malaysia | 1970 | JEU70421 |
| 3 | Beijing 1 | Human brain | China | 1949 | JEU70389 |
| 3 | CH2195 | NAa | China | 1994 | JEU92644 |
| 3 | FJ03-97 | Homo sapiens | China | 2006b | DQ404127 |
| 3 | GZ04-43 | Culex sp | China | 2006b | DQ404113 |
| 3 | HLJ08-01 | Swine | China | 2008 | GQ495004 |
| 3 | HLJ08-02 | Swine | China | 2008 | GQ495005 |
| 3 | SA14-14-2* | SA-14 derivate | China | 1953 | AF315119 |
| 3 | SH04-10 | Culex tritaeniorhynchus | China | 2006b | DQ404107 |
| 3 | YNDL04-1 | Culex tritaeniorhynchus | China | 2006b | DQ404137 |
| 3 | Chiang Mai | Human | Thailand | 1964 | JEU70393 |
| 3 | B18A | Mosquito | Japan | 1978 | JEU70390 |
| 3 | Mie44-1 | Mosquito | Japan | 1969 | JEU70411 |
| 3 | Nakayama* | Human brain | Japan | 1935 | JEU70413 |
| 3 | Osaka | Mosquito | Japan | 1979 | JEU70414 |
| 3 | Sagiyama | Mosquito | Japan | 1957 | JEU70419 |
| 3 | JaNAr0990 | Mosquito | Japan | 1990 | AY427797 |
| 3 | JaOH0566 | Human brain | Japan | 1966 | JEU70399 |
| 3 | JaOH3767 | Human brain | Japan | 1967 | JEU70400 |
| 3 | K83P34 | Mosquito | Republic of Korea | 1983 | FJ938231 |
| 3 | K84A071 | Mosquito | Republic of Korea | 1984 | FJ938224 |
| 3 | K87A071 | Mosquito | Republic of Korea | 1987 | FJ938226 |
| 3 | K88A071 | Mosquito | Republic of Korea | 1988 | FJ938228 |
| 3 | K94A071 | Mosquito | Republic of Korea | 1994 | FJ938217 |
| 3 | H49778 | Human | Sri Lanka | 1987 | JEU70395 |
| 3 | Indonesia | Mosquito | Indonesia | 1996b | JEU70397 |
| 3 | JKT6468 | Mosquito | Indonesia | 1981 | JEU70407 |
| 3 | 826309 | Human | India | 1982 | JEU70403 |
| 3 | P20778 | Human | India | 1958 | JEU70415 |
| 3 | R53567 | NAa | India | 1996b | JEU70418 |
| 3 | PhAn1242 | Pig serum | Philippines | 1984 | JEU70417 |
| 3 | VN118 | Mosquito | Vietnam | 1979 | JEU70420 |
| 4 | JKT7003 | Mosquito | Indonesia | 1981 | JEU70408 |
| 4 | JKT9092 | Mosquito | Indonesia | 1981 | JEU70409 |
| 4 | 2372 | Human | Thailand | 1979 | JEU70401 |
| 5 | XZ0934 | Mosquito | China | 2009 | JF915894 |
a
Not available
b
Submitted date
*
Vaccine strains that have been used in the Republic of Korea.