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. Author manuscript; available in PMC: 2014 Feb 1.
Published in final edited form as: J Biomed Inform. 2012 Sep 28;46(1):128–138. doi: 10.1016/j.jbi.2012.09.003

Table 3.

Exemplary Illustrations of Lexical Representations: Column 1 lists sample lexical representations in their original source formats; Column 2 shows their corresponding sources; Column 3 indicates the relation between the sample representation and its corresponding guidelines where “illustrated” means that the guide is illustrated in the example and “recommend” means that the guideline is not illustrated in the example, but we recommend using the listed guidelines.

Example in Original Format Source Relation to Guidelines
1 <owl:versionInfo> Version 1.2, copyright The University of Manchester, Nick Drummond, Georgina Moulton, Robert Stevens, Phil Lord </owl:versionInfo> AA recommend L1–L3
2 <dc:rights>free, no license required </dc:rights> OBI L4 illustrated
3 <dc:source>Barry Smith: ”Against Fantology”</dc:source> BFO L5 illustrated
4 <preferred_label>Carollia</preferred_label> BIRNLex recommend L6
5 xmlns:core=”http://www.w3.org/2004/02/skos/core#<core:prefLabel>Drug Delivery Device</core:prefLabel> BFO L6 illustrated
6 <npo:preferred_Name>aluminium atom</npo:preferred_Name> NPO recommend L6
7 <abbrev>cislt</abbrev> BIRNLex L7 not fulfilled
8 <synonyms>Cisterna lamina terminalis|Lamina Terminalis Cistern</synonyms> BIRNLex recommend L7
9 <definition>The series of events in which a sensory light stimulus is received and converted into a molecular signal. [GO:ai] (GO)</definition> BIRNLex recommend L9
10 xmlns:desc=”http://bioontology.org/ontologies/biositemap.owl#<desc:definition>As defined by the USA, http://en.wikipedia.org/wiki/Medical_device</desc:definition> BRO recommend L9
11 <rdfs:comment>Definition: The biological source of an entity (e.g. protein, RNA or DNA). Some entities are considered source-neutral (e.g. small molecules), and the biological source of others can be deduced from their constituents (e.g. complex, pathway). Examples: HeLa cells, human, and mouse liver tissue.</rdfs:comment> BioPax recommend L9–L10