Table 4.
Detailed Information for Ontologies in Table 3: Column 1 shows the acronym of each ontology; Column 2 shows the full names; Column 3 shows their URIs and Column 4 shows the versions of the ontologies we used to evaluate
| Acronym | Name | Source URI | Version |
|---|---|---|---|
| AA | Amino Acid Ontology | http://www.coode.org/ontologies/amino-acid/2006/05/18/amino-acid.owl | 2.0 |
| BFO | Basic Formal Ontology | http://www.ifomis.org/bfo/1.1 | 1.1 |
| BIRNLex | BIRNLex (Biomedical Informatics Research Network controlled terminology) | http://bioontology.org/projects-/ontologies/birnlex | 1.3.1 |
| BRO | Biomedical Resource Ontology | http://bioontology.org/ontologies/BiomedicalResourceOntology.owl | 2.7.1 |
| BioPax | Biological Pathways Exchange Level 3 | http://www.biopax.org/release/biopaxlevel3.owl | 0.94 |
| NPO | Nano Particle Ontology | http://purl.bioontology.org/ontology/npo | 1.0 |
| OBI | The Ontology for Biomedical Investigations | http://purl.obolibrary.org/-obo/obi.owl | 1.0 |
| SAO | Subcellular Anatomy Ontology | http://ccdb.ucsd.edu/SAO/1.2 | 1.2 |