Table 3.
Top ten proteins unique to control samples across 7 biological replicates1
| NCBI GI # | Gene name2 | Total Peptide Identifications5 |
Total PD Score6 |
|---|---|---|---|
| 194386544 | Poly(A) binding protein, cytoplasmic 1 (PABPC1) | 67 | 215.65 |
| 4503483 | Eukaryotic translation elongation factor 2 | 34 | 174.96 |
| 194381632 | BASP1 | 21 | 79.72 |
| 55958544 | hnRNP K | 14 | 73.63 |
| 18375673 | UPF1 | 20 | 59.42 |
| 194382312 | SRSF10 | 6 | 51.65 |
| 157412270 | hnRNP M | 11 | 48.65 |
| 55959640 | Poly(A) binding protein, cytoplasmic 4 (PABPC4) | 9 | 45.04 |
| 13544110 | Calmodulin 3 | 6 | 39.01 |
| 119577230 | hnRNP L | 4 | 30.71 |
1
Ranked by Proteome Discoverer score. Ribosomal proteins were omitted due to the high frequency in both infected and control samples.
2
NCBI Gene name. Unknown protein hits were identified by BLAST homology search.
3
The total number of peptides identified across all seven biological replicates that reference the indicated GI number.
4
The sum total of Protoeome Discoverer (PD) score for all seven bioloigical replicates.