Table 4.
Top ten proteins enriched in control samples across 7 biological replicates1
| NCBI GI # | Gene name2 | Total PD Score (Inf/Cont)3 |
|---|---|---|
| 213417919 | PRKRA protein kinase, interferon-inducible double stranded RNA dependent activator | 4.9 / 76.28 |
| 33875035 | STAU1 protein | 2.23 / 22.22 |
| 181486 | YBX1 Y box binding protein 1 | 45.86 / 348.68 |
| 9714266, 212549553 | Interleukin enhancer binding factor 3, 90kDa | 6.92 / 226.94 |
| 55962124 | Interleukin enhancer binding factor 2, 45kDa | 16.49 / 89.63 |
| 194391252 | PRPF40A PRP40 pre-mRNA processing factor 40 homolog A | 8.54 / 47.22 |
| 194383864 | Heterogeneous nuclear ribonucleoprotein F | 22.04 / 71.15 |
| 194387074 | Heterogeneous nuclear ribonucleoprotein C | 21.18 / 152.18 |
| 7242140 | ClpX caseinolytic peptidase X homolog | 8.52 / 40.08 |
| 3005744 | Family with sequence similarity 120A | 9.15 / 54.44 |
1
Ranked by fold enrichment as measured by the ratio of total Proteome Discover (PD) score in the infected versus uninfected samples. Ribosomal proteins were omitted due to high frequency in both infected and control samples.
2
NCBI Gene name. Unknown protein hits were identified by BLAST homology search.
3
The sum total of PD score for all protein identifications across the seven biological replicates in both the infected (inf) and control (cont) groups.