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. 2012 Feb 1;32(5):1884–1897. doi: 10.1523/JNEUROSCI.3136-11.2012

Figure 2.

Figure 2.

Illumina probes can detect expression of TEs in human genome. Shown are seven example panels from the UCSC Genome Browser (http://genome.ucsc.edu) showing genomic locations that are perfect matches for several Illumina probes representing TEs. Each panel shows whole chromosome on top, with the small red bar representing the location of the Illumina probe. The next track (in blue) shows the location of a known gene, which is followed by the location of the Illumina probe (in brown). Four tracks at the bottom represent the location of known or predicted TEs, including SINE, LINE, LTR, and DNA transposons. Red arrows point to TEs to which Illumina probes map. A, Probe mapping to an LTR transposon and a 3′UTR of a known gene (IGFL3). B, Probe mapping to a SINE transposon and a 3′UTR of RAX2gene. C, Probe mapping to a LINE transposon and a 3′UTR of FCRL2 gene. D, Probe mapping to a DNA transposon and a 3′UTR of ZNF395 gene. E, Probe mapping to a SINE transposon and an intron of RCBTB2 gene. F, Probe mapping to an LTR transposon and an intron of TTY14 gene. G, Probe mapping to an LTR transposon and an intergenic region.