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. 2013 Jan 7;13:3. doi: 10.1186/1471-2180-13-3

Table 2.

Spacers allelic polymorphism and MST a genotypes of M. abscessus, “M. bolletii” and “M. massiliense” isolates

Isolates Spacer1 Spacer2 Spacer3 Spacer4 Spacer5 Spacer6 Spacer7 Spacer8 Genotype
M.abscessus_ATCC19977_CIP104536T
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus_DSMZ44567
 2
 1
 2
 2
 2
 1
 2
 1
 2
P1
 2
 1
 2
 2
 2
 1
 2
 1
 2
P2.1
 1
 2
 1
 3
 1
 1
 2
 2
 3
P2.2
 1
 2
 1
 3
 1
 1
 2
 2
 3
P2.3
 1
 1
 1
 1
 1
 1
 1
 1
 1
P2.4
 1
 1
 1
 1
 1
 1
 1
 1
 1
P2.5
 1
 1
 1
 1
 1
 1
 1
 1
 1
P2.6
 1
 1
 1
 1
 1
 1
 1
 1
 1
P3.1
 3
 1
 2
 1
 1
 1
 2
 1
 4
P3.2
 3
 1
 2
 1
 1
 1
 2
 1
 4
P4
 1
 1
 1
 1
 1
 1
 1
 2
 5
P5
 1
 1
 1
 1
 3
 1
 2
 1
 6
P6
 1
 1
 1
 1
 1
 1
 1
 1
 1
P7
 4
 1
 2
 4
 4
 1
 2
 1
 7
P8
 4
 1
 2
 4
 4
 1
 3
 1
 8
M.abscessus_3A-0930-R_3A_0930_R
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus_3A-0930-S_3A_0930_S
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus_3A-0122-S_3A_0122_S
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus_3A-0731_3A_0731
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus_3A-0122-R_3A_0122_R
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus_3A-0119-R_3A_0119_R
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus_6G-0728-R_M6G_0728_R
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus_6G-0212_M6G_0212
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus _6G-1108_6G_1108
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus _6G-0728-S_6G_0728_S
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus_6G-0125-R_6G_0125_R
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus _6G-0125-S_6G_0125_S
 1
 1
 1
 1
 1
 1
 1
 1
 1
M.abscessus_4S-0116-S_4S_0116_S
 5
 1
 2
 5
 5
 2
 2
 2
 9
M.abscessus_4S-0116-R_4S_0116_R
 5
 1
 2
 5
 5
 2
 2
 2
 9
M.abscessus_4S-0206_M4S_0206
 5
 1
 2
 5
 5
 2
 2
 2
 9
M.abscessus_4S-0726-RB_4S_0726_RB
 5
 1
 2
 5
 5
 2
 2
 2
 9
M.abscessus_4S-0303_4S_0303
 5
 1
 2
 5
 5
 2
 2
 2
 9
M.abscessus_4S-0726-RA_4S_0726_RA
 5
 1
 2
 5
 5
 2
 2
 2
 9
M.abscessus_M93
 3
 1
 2
 6
 6
 1
 2
 3
 10
M.abscessus_M94
 2
 1
 2
 2
 7
 1
 4
 2
 11
M.abscessus_M152
 2
 1
 2
 7
 7
 1
 2
 3
 12
M.bolletti_CIP108541T
 6
 3
 3
 3
 8
 1
 5
 2
 13
P9
 6
 3
 3
 3
 8
 1
 5
 2
 13
P10
 7
 4
 1
 3
 8
 1
 2
 2
 14
M.abscessus_M24
 8
 3
 4
 8
 8
 1
 2
 2
 15
M.massilliense_CIP108297T
 5
 5
 5
 9
 9
 1
 6
 3
 16
P11
 5
 5
 5
 9
 9
 1
 6
 3
 16
M.massiliense _2B-0912-S_2B_0912_S
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.massiliense_2B-030_ M2B_0307
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.massiliense_2B-0912-R_2B_0912_R
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.massiliense_2B-0626_M2B_0626
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.massiliense_2B-1231_M2B_1231
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.massiliense_2B-0107_M2B_0107
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.massiliense _1S-154-0310_M1S_154_0310
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.massiliense_1S-152-0914_M1S_152_0914
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.massiliense_1S-153-0915_M1S_153_0915
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.massiliense_1S-151-0930_M1S_151_0930
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.massiliense _M18
 9
 5
 6
 10
 10
 2
 7
 3
 17
M.abscessus_M159
 9
 6
 6
 9
 10
 3
 7
 4
 18
M.abscessus_47J26
 9
 5
 6
 6
 11
 4
 7
 3
 19
M.abscessus_M172
 10
 7
 2
 9
 12
 3
 8
 5
 20
M.abscessus_M154
 10
 7
 2
 9
 12
 3
 8
 5
 20
M.abscessus_5S-1215_5S_1215
 11
 5
 2
 6
 13
 2
 6
 2
 21
M.abscessus_5S-1212_5S_1212
 11
 5
 2
 6
 13
 2
 6
 2
 21
M.abscessus_5S-0817_5S_0817
 11
 5
 2
 6
 13
 2
 6
 2
 21
M.abscessus_5S-0708_5S_0708
 11
 5
 2
 6
 13
 2
 6
 2
 21
M.abscessus_5S-0422_5S_0422
 11
 5
 2
 6
 13
 2
 6
 2
 21
M.abscessus_5S-0304_5S_0304
 11
 5
 2
 6
 13
 2
 6
 2
 21
M.abscessus_5S-0421_5S_0421
 11
 5
 2
 6
 13
 2
 6
 2
 21
M.abscessus_M156
 10
 7
 2
 11
 12
 3
 9
 5
 22
M.abscessus_M148
 10
 7
 2
 11
 12
 3
 9
 5
 23
M.abscessus_M139
 10
 5
 2
 11
 14
 3
 10
 3
 24
DI 0.8295 0.6228 0.6969 0.8001 0.8371 0.6038 0.8084 0.7158 0.912

aMST = Multispacer Sequence Typing. b isolates were listed with reference to their corresponding patient, for example P1 = isolate 1 from patient 1, P2.1 = isolate 1 from patient 2, etc. cDI = Discrimination index.