Table 2. Contig metrics from the de novo assembly based on transcriptome data pooled from three different Teleogryllus oceanicus tissues.
Metric | Number (>500 bp) | Total Number |
---|---|---|
Contig number | 12,332 | 41,965 |
Average contig size | 894 | 459 |
Median contig size | 727 | 373 |
Median read depth | 73 | 2.4 |
Mean read depth | 176 | 9 |
Largest contig | 10,718 |
Read depth was skewed toward very small numbers, with only 1424 sequences mapped by >30 reads.