Table 1.
The coding potential calculator (CPC) shows that Tg-ncRNA-1 is a non-coding RNA. B41(L) and B41(S) correspond to Tg-ncRNA-1 long isoform and short isoform respectively (isoforms shown in Figure 2A).
| Sequence ID | C/NC | Coding potential score | Hit num | Hit score | Frame score | Coverage | Log-odds score | Type |
|---|---|---|---|---|---|---|---|---|
| B41(L) | Noncoding | −1.4067 | 0 | 0.0 | 0.0 | 8.07% | 20.32 | Full |
| B41(S) | Noncoding | −1.2738 | 0 | 0.0 | 0.0 | 22.34% | 20.32 | Full |
| TGGT1_087710 cGMP kinase | Coding | 2.69204 | 250 | 49.54 | 514.4 | 3.73% | 80.42 | Partial |
| TGME49_000320 HXGPRT | Coding | 1.39359 | 140 | 17.73 | 128.9 | 12.41% | 62.36 | Partial |
| Tsix_mus | Noncoding | −1.3004 | 0 | 0.0 | 0.0 | 3% | 27.5 | Full |
| AF282387 | Coding | 3.32462 | 150 | 25.00 | 208.4 | 99.43% | 109.4 | Full |