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. 2013 Feb 6;8(2):e55148. doi: 10.1371/journal.pone.0055148

Table 3. The diversity indices and richness estimators of the bacterial and archaeal 16S rRNA gene clone libraries. OTUs of the 16S rRNA gene sequences were determined at 3% for bacteria and 2% for archaea sequence distance cut-off using the DOTUR program.

Clone library No. of clone No. of singleton No. of OTUs C H 1/D J SACE Schao1
BU1368 180 166 39 88.9 4.37 15.48 0.828 71.0 63.4
BU1369 196 155 54 85.7 4.80 16.10 0.834 91.3 86.5
BU1370 196 193 64 79.6 5.19 23.53 0.865 128.6 142.8
BU1371 185 166 61 81.1 5.06 18.44 0.853 115.9 101.6
AU1368 88 66 13 92.0 2.40 3.53 0.650 28.2 34
AU1369 92 72 20 83.7 2.96 4.97 0.683 69.8 111
AU1370 88 63 17 89.8 2.66 3.69 0.649 29.5 29
AU1371 87 60 15 90.8 2.23 2.52 0.571 28.5 29

The coverage (C), Shannon-Weiner (H), Simpson (D) and evenness (J) indices, and SACE and Schao1 richness estimators were calculated using the OTU data.