Skip to main content
. 2013 Feb 6;8(2):e55240. doi: 10.1371/journal.pone.0055240

Table 4. Subsystems identified by RAST in isolates 7h1h and RM4018.

Subsystem Feature Number in 7h1h Genome Number in RM4018 Genome
Cofactors, Vitamins, Prosthetic Groups, Pigments 68 144
Cell Wall and Capsule 54 79
Virulence, Disease and Defence 16 35
Adhesion 0 0
toxins and superantigens 0 0
bacteriocins and ribosomally synthesized antibacterial peptides 0 0
resistance to antibiotics and toxic compounds 16 35
virulence, disease and defence – no subcategory 0 0
Detection 0 0
invasion and intracellular resistance 0 0
Potassium Metabolism 15 18
Photosynthesis 0 0
Miscellaneous 5 67
Phages, Prophages, Transposable Elements, Plasmids 5 5
phage family-specific subsystems 0 0
phages, prophages, transposable elements 0 0
transposable elements 5 0
pathogenicity islands 0 4
gene transfer agent 0 0
plasmid related functions 0 0
phages, prophages 0 1
Membrane Transport 20 37
Iron Acquisition and Metabolism 1 0
RNA Metabolism 30 68
Nucleosides and Nucleotides 26 43
Protein Metabolism 69 174
Cell Division and Cell Cycle 13 21
Motility and Chemotaxis 12 60
Regulation and Cell Signalling 8 14
Secondary Metabolism 0 5
DNA Metabolism 46 64
Fatty Acids, Lipids and Isoprenoids 48 33
Nitrogen Metabolism 16 12
Dormancy and Sporulation 0 1
Respiration 49 71
Stress Response 39 58
Osmotic stress 0 1
Dessication stress 0 0
Oxidative stress 21 29
Cold shock 1 1
Heat shock 14 13
No subcategory 0 12
Detoxification 3 3
Periplasmic stress 2 2
Metabolism of Aromatic Compounds 1 7
Amino Acids and Derivatives 98 229
Sulfur Metabolism 11 11
Phosphorus Metabolism 3 21
Carbohydrates 45 107