Table 1. Microarray samples used for network construction.
| Organism | NCBI GEO Platform | Samples Used | Probe Setsa | Genome Assembly Version | Transcripts in Genome Assembly | Genes Measured by Platformb | Genes in Global Networkc |
| Human | GPL570 | 2,000 | 40,685 | hg19 | 1,962,491 | 18,509 | 828 (4%) |
| Rice | GPL2025 | 1,360 | 52,489 | MSU v6.0 | 67,393 | 37,151 | 2660 (7%) |
| Yeast | GPL2529 | 1,701 | 10,359 | S288C | 6,717 | 5,750 | 805 (14%) |
a
Total probe sets after removal of control probe sets, ambiguous and outlier probe sets.
b
Only includes genes that map unambiguously to probe sets with no differentiation between splice variants.
c
Percentage is in terms of measurable genes.