Skip to main content
. 2013 Feb 7;8(2):e55603. doi: 10.1371/journal.pone.0055603

Table 5. GSEA pathways down-regulated due to treatment with FO diet, as compared to control samples.

Pathway NominalP-value* FDRq value Pathway (continued) NominalP-value FDRq value
Organelle inner membrane 0.0000 0.0185 Cellular lipid catabolic process 0.0088 0.0519
Microbody 0.0000 0.0179 Mitochondrial membrane 0.0100 0.0163
Peroxisome 0.0000 0.0161 Cofactor metabolic process 0.0101 0.0600
Transferase activity – transferring acyl groups 0.0000 0.0172 Hsa00620: Pyruvate metabolism 0.0105 0.0581
Transferase activity – transferring groups other thanamino acyl groups 0.0000 0.0214 Detection of stimulus involved in sensory perception 0.0122 0.0668
Mitochondrial envelope 0.0020 0.0142 Oxidoreductase activity 0.0123 0.0616
Mitochondrion 0.0021 0.0132 Energy derivation by oxidation of organic compounds 0.0125 0.0533
Hsa00020: Citrate cycle 0.0021 0.0433 Hsa00071: Fatty acid metabolism 0.0126 0.0468
Electron carrier activity 0.0040 0.0173 Lipid catabolic process 0.0128 0.0592
Coenzyme metabolic process 0.0041 0.0508 Mitochondrial respiratory chain 0.0166 0.0221
Mitochondrial inner membrane 0.0041 0.0182 Aerobic respiration 0.0189 0.0585
Cellular respiration 0.0042 0.0435 Hsa00030: Pentose phosphate pathway 0.0199 0.0725
Envelope 0.0058 0.0584 Mitochondrion organization and biogenesis 0.0218 0.0795
Organelle envelope 0.0058 0.0563 Mitochondrial lumen 0.0219 0.0469
Mitochondrial part 0.0059 0.0175 Mitochondrial matrix 0.0219 0.0445
Mitochondrial membrane part 0.0060 0.0117 Nucleobase – nucleoside and nucleotide metabolic process 0.0246 0.0811
Generation of precursor metabolites and energy 0.0060 0.0559 Cofactor biosynthetic process 0.0288 0.0932
Hsa00190: Oxidative phosphorylation 0.0061 0.0214 Oxidoreductase activity – acting on CH-OH group of donors 0.0288 0.0734
Fatty acid metabolic process 0.0064 0.0378 Hsa00650: Butanoate metabolism 0.0295 0.0919
Hsa00640: Propanoate metabolism 0.0084 0.0499 Hsa00280: Valine, leucine, and isoleucine degradation 0.0343 0.0602
*

P<0.05;

FDR q<0.1.