Table 1.

Supported databases and tools in pseudoMap

Integrated database or tools	Dataset	Description
miRBase (29, 30)	miRNA annotation	This database not only provides published miRNA sequences and annotations but also supplies known/predict targets
Functional RNA Database (27)	sRNA annotation	A database to support mining and annotation of functional RNAs
Ensembl Genome Browser (26)	Pseudogene, protein-coding gene	It produces genome databases for vertebrates and other eukaryotic species
UCSC Genome Browser (39)	Conserved region and Genomic view of genes	This browser provides a rapid and reliable display of any requested portion of genomes at any scale, together with dozens of aligned annotation tracks
GeneCards (52)	Gene annotation	GeneCards is a searchable, integrated, database of human genes that provides concise genomic-related information of all known and predicted human genes
Mfold (40)	RNA folding tool	Folding RNA structure
GEO (47)	Gene expression profiles and deep sequencing data	A public functional genomics data
BLAST (51)	Sequence alignment tool	BLAST finds regions of similarity between biological sequences