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. 2013 Feb 8;4:9. doi: 10.3389/fmicb.2013.00009

FIGURE 4.

FIGURE 4

Maximum-likelihood tree of IMP genes obtained with the Tamura-3P model of evolution. Multiple sequence alignments were obtained using the corresponding amino acid sequences with Muscle (Edgar, 2004a,b). Maximum-likelihood trees were obtained using the most appropriate model of evolution resulting from the comparison of Bayesian Information Criterion (BIC) values for 24 alternative models including gamma-distributed heterogeneous rates of evolution among and invariant sites. Support of the inferred clusters was evaluated with 1000 bootstrap replicates, BS values >70% are indicated. All these methods were used as implemented in MEGA 5 (Tamura et al., 2011). The scale bar corresponds to substitutions/site. Detection of positive selection and neutrality tests were performed as described in Figure 2.