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. 2013 Feb 8;8(2):e56288. doi: 10.1371/journal.pone.0056288

Table 1. Mitochondrial and nuclear DNA sequences from Bursaphelenchus xylophilus (Bx) and B. mucronatus (Bm) isolates used in the present study.

Isolate code Isolate origin Culture GenBank accession numbers (genetic marker)
BxCa188 Canada (Quebec) AY508071 (COI), AY508108 (28S rRNA)
BxCa185 Canada AY508068 (COI), AY508105 (28S rRNA)
BxCa187 Canada (New Brunswick) AY508070 (COI), AY508107 (28S rRNA)
BxCaBC Canada (British Columbia) AB108439 (ITS-2)
BxCaFIDS Canada AB108441 (ITS-2)
BxCaQ52A Canada (Quebec) AB108444 (ITS-2)
BxCaStJ Canada AB108445 (ITS-2)
BxCaBXCANADA Canada EF446946 (ITS-2), EF446935 (28S rRNA)
BxCaCA Canada JF317229 (ITS-2), JF317239 (28S rRNA)
BxCaQ52 Canada JF317230 (ITS-2), JF317241 (28S rRNA)
BxCaBC2 Canada JF317231 (ITS-2), JF317240 (28S rRNA)
BxCaBxCAN Canada EU295503 (28S rRNA)
BxUSA618 USA 2008 JN596443 (COI), JN596460 (ND5), JN596470 (s-rRNA)
BxUSA745 USA 2008 JN596444 (COI), JN596461 (ND5)
BxUSA30697 USA JF317255 (COI)
BxUSA4049 USA JF317256 (COI), JF317232 (ITS-2)
BxUSA121AD USA JF317257 (COI), JF317234 (ITS-2), JF317244 (28S rRNA)
BxUSAMO USA AB108442 (ITS-2)
BxUSABXUSA2 USA EF446951 (ITS-2), EF446940 (28S rRNA)
BxUSAUS10 USA JF317243 (28S rRNA)
BxUSA39906 USA JF317245 (28S rRNA)
BxJT4 Japan (Iwate) <2008 JN596430 (COI), JN596458 (ND5), AB108446/AB277207 (ITS-2)
BxJ10 Japan <2001 JN596429 (COI), JN596459 (ND5), JN596466 (s-rRNA)
BxJpS10 Japan (Shimane) AB067766 (COI), AB277206/U92464 (ITS-2)
BxJp186 Japan (Mito) AY508069 (COI), AY508106 (28S rRNA)
BxJpAB050051 Japan (Akita, Ohmori) AB050051 (ITS-2)
BxJpAB050052 Japan (Niigata, Murakami) AB050052 (ITS-2)
BxJpAB050053 Japan (Ibaraki, Tsukuba) AB050053 (ITS-2)
BxJpKyoto1 Japan (Kyoto) AB050054 (ITS-2)
BxJpKyoto2 Japan (Kyoto) AB050055 (ITS-2)
BxJpAB050056 Japan (Yamaguchi, Tokuyama) AB050056 (ITS-2)
BxJpAB050057 Japan (Ehime, Imabari) AB050057 (ITS-2)
BxJpAB050058 Japan (Nagasaki, Shimabara) AB050058 (ITS-2)
BxJpAB050059 Japan (Okinawa, Kunigami) AB050059 (ITS-2)
BxJpOk-2 Japan (Okinawa) AB108443 (ITS-2)
BxJpC14-5 Japan (Chiba, Ichinomiya) AB277203 (ITS-2)
BxJpOKD1 Japan (Okayama, Okayama) AB277205 (ITS-2)
BxJpBCMUBX18 Japan (Aichi, Nissin, Iwasaki-cho) AB294736 (ITS-2)
BxJpAY347913 Japan AY347913 (ITS-2)
BxJpBXJ1 Japan EF446943 (ITS-2), EF446934 (28S rRNA)
BxJpXylT4 Japan DQ356002 (28S rRNA)
BxJpBxJAP Japan EU295504 (28S rRNA)
BxCSD China <2009 JN596428 (COI), JN596456 (ND5), JN596465 (s-rRNA)
BxChBXC China AB108440 (ITS-2)
BxChAY347911 China (Xiangshan, Zhejiang) AY347911 (ITS-2)
BxChAY347912 China (Nanjing, Jiangsu) AY347912 (ITS-2)
BxChBXCNJ3 China (Nanjing, Jiangsu) EF446944 (ITS-2), EF446929 (28S rRNA)
BxChBXCAJ China (Mingguang, Anhui) EF446945 (ITS-2), EF446942 (28S rRNA)
BxChBXCSC China (Changdao, Shandong) EF446947 (ITS-2), EF446932 (28S rRNA)
BxChBXCNJ2 China (Nanjing, Jiangsu) EF446948 (ITS-2), EF446941 (28S rRNA)
BxChBXCGD China (Dongguan, Guangdong) EF446950 (ITS-2), EF446933 (28S rRNA)
BxChBXCZZ China (Zhoushan, Zhejiang) EF446952 (ITS-2), EF446937 (28S rRNA)
BxChXM_1 China (Fujian) EU259322 (ITS-2)
BxChDQ364687 China (Xiangshan) DQ364687 (28S rRNA)
BxChBXCNJ1 China (Nanjing, Jiangsu) EF446930 (28S rRNA)
BxChBXCNJ4 China (Nanjing, Jiangsu) EF446931 (28S rRNA)
BxChBxLYG China (Lianyungang) EU295491 (28S rRNA)
BxTaNe6/05 China (Taiwan) AM179515 (ITS-2)
BxTaTWRC China (Taiwan) JF317242 (28S rRNA)
BxKAS South Korea <2008 JN596431 (COI), JN596457 (ND5), JN596467 (s-rRNA)
BxPt11AS Portugal (Alcácer do Sal) 2005 JN596432 (COI), JN596447 (ND5)
BxPt15SC Portugal (Santiago do Cacém) 2007 JN596433 (COI), JN596448 (ND5)
BxPt17AS Portugal (Alcácer do Sal) 2007 JN596434 (COI), JN596449 (ND5), JN596468 (s-rRNA)
BxPt19SCD Portugal (Santa Comba Dão) 2008 JN596435 (COI), JN596450 (ND5), JN596469 (s-rRNA)
BxPt21T Portugal (Tábua) 2008 JN596436 (COI), JN596451 (ND5)
BxPt56M Portugal (Mealhada) 2009 JN596438 (COI), JN596446 (ND5)
BxPt60OH Portugal (Oliveira do Hospital) 2009 JN596437 (COI), JN596445 (ND5)
BxPtHF Portugal (Herdade de Ferraria) AB277204 (ITS-2)
BxPtTroia Portugal (Troia) AB277208 (ITS-2)
BxPtPT1w Portugal (Pegões) AM157747 (ITS-2), AM396580 (28S rRNA)
BxPtBXPOT Portugal EF446949 (ITS-2), EF446936 (28S rRNA)
BxMad1F Portugal (Madeira Island) 2010 JN596439 (COI), JN596452 (ND5)
BxMad2M Portugal (Madeira Island) 2010 JN596440 (COI), JN596453 (ND5)
BxMad3F Portugal (Madeira Island) 2010 JN596441 (COI), JN596454 (ND5)
BxMad4SV Portugal (Madeira Island) 2010 JN596442 (COI), JN596455 (ND5)
BxSpEFA1 Spain HQ646254 (ITS-2)
BxMe39906-1 Mexico JF317253 (COI)
BxMe39906-2 Mexico JF317254 (COI)
BxMe39906 Mexico JF317233 (ITS-2)
BmJpM Japan AB067765 (COI)
BmJp163 Japan AY508049 (COI), AY508086 (28S rRNA)
BmJp424B Japan JF317260 (COI), JF317235 (ITS-2), JF317246 (28S rRNA)
BmChAY347915 China (Hong Kong) AY347915 (ITS-2)
BmChAY347916 China (Fuyang, Zhejiang) AY347916 (ITS-2)
BmChBMCSC China (Zhoushan, Zhejiang) EF446953 (ITS-2), EF446938 (28S rRNA)
BmChXM China (Fujian) EU296624 (ITS-2)
BmKo39571 South Korea JF317261 (COI), JF317236 (ITS-2), JF317247 (28S rRNA)
BmKoAY347914 South Korea AY347914 (ITS-2)
BmPt1 Portugal 2008 JN596463 (s-rRNA)
BmPt2 Portugal 2008 JN596464 (s-rRNA)
BmSp860A Spain JF317262 (COI)
BmG1 Germany <2001 JN596427 (COI), JN596462 (s-rRNA)
BmG166 Germany (Zusmarshausen) AY508052 (COI), AY508089 (28S rRNA)
BmG167 Germany (Grunberg) AY508053 (COI), AY508090 (28S rRNA)
BmG168 Germany (Zusmarshausen) AY508054 (COI), AY508091 (28S rRNA)
BmFi165 Finland AY508051 (COI), AY508088 (28S rRNA)
BmNo164 Norway (Hanestad) AY508050 (COI), AY508087 (28S rRNA)
BmUk38624 Ukraine JF317258 (COI)
BmUk53106 Ukraine JF317238 (ITS-2)
BmRuBMRUSSIAN Russia EF446939 (28S rRNA)
BmIs5459 Israel JF317237 (ITS-2)
BmBr4228 Brazil JF317259 (COI)

The list includes sequences from the mitochondrial cytochrome c oxidase subunit I (COI), NADH dehydrogenase subunit 5 (ND5) and small subunit ribosomal RNA (s-rRNA) genes and the nuclear internal transcribed spacer 2 (ITS-2) and 28S ribosomal RNA gene (28S rRNA). The accession numbers in bold indicate new sequences obtained in this work.