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. 2013 Feb 8;8(2):e55717. doi: 10.1371/journal.pone.0055717

Table 2. Sequences of ASO primers and corresponding annealing temperatures (bold nucleotides in the primers denote nucleotide changes corresponding to mutations).

*Primer name Primer polarity **Nucleotide change 5′–3′ sequence $L(bp) #A Tm(°C)
1. M244V-F F A1094G GAACGCACGGACATCACCG 19 65.7
2. L248V F C1106G ACCATGAAGCACAAGG 16 55
3. G250E F G1113A GAAGCACAAGCTGGGCGA 18 56
4. Q252H(a) F G1120C AGCTGGGCGGGGGCCAC 17 62
5. Q252H(b) F G1120T AGCTGGGCGGGGGCCAT 17 62
6. Y253H F T1121C GCTGGGCGGGGGCCAGC 17 62
7. Y253F F A1122T CTGGGCGGGGGCCAGTT 17 55
8. E255K F G1127A GCGGGGGCCAGTACGGGA 18 68
9. E255V F A1128T GCGGGGGCCAGTACGGGGT 19 58
244 R R(1–9) GCCAATGAAGCCCTCGGAC 19
10. F311L F T932C CACCCGGGAGCCCCCGC 17 62
R(10) CCCCTACCTGTGGATGAAGT 20
11. T315I F C1308T GCCCCCGTTCTATATCATCAT 21 63.4
12. F317L F C1315G CCGTTCTATATCATCACTGAGTTG 24 54
315 R R(11–12) GGATGAAGTTTTTCTTCTCCAG 22
13. M343T F T1392C GTGGTGCTGCTGTACAC 17 62
14. M351T F T1416C CCACTCAGATCTCGTCAGCCAC 22 70
351 R1 R (13–14) GCCCTGAGACCTCCTAGGCT 20
15. E355G A1428G GTCAGCCATGGAGTACCTAGG 21 56
16. F359V F T1439G GAGTACCTAGAGAAGAAAAACG 22 50
351 R2 R (15–16) ATGCCCAAAGCTGGCTTTG 19
17. H396R F A1551G GGACACCTACACAGCCCG 18 62.5
369 R R(17) GGACACCTACACAGCCCG 18
18. F486S F T1821C TCTGACCGGCCCTCCTC 17 62
486 R R(18) AGCTTTCTGGTCTCAGGA 18
*

Substitutions of amino acids; positions according to GenBank no. AAB60394for ABL type 1a.

**

Changes of nucleotide; positions according to GenBank no.M14752.

$

L (bp) = Primer length in base pairs.

#

A Tm =  Annealing temperature in degree Celsius.