Table 2. Sequences of ASO primers and corresponding annealing temperatures (bold nucleotides in the primers denote nucleotide changes corresponding to mutations).
*Primer name | Primer polarity | **Nucleotide change | 5′–3′ sequence | $L(bp) | #A Tm(°C) |
1. M244V-F | F | A1094G | GAACGCACGGACATCACCG | 19 | 65.7 |
2. L248V | F | C1106G | ACCATGAAGCACAAGG | 16 | 55 |
3. G250E | F | G1113A | GAAGCACAAGCTGGGCGA | 18 | 56 |
4. Q252H(a) | F | G1120C | AGCTGGGCGGGGGCCAC | 17 | 62 |
5. Q252H(b) | F | G1120T | AGCTGGGCGGGGGCCAT | 17 | 62 |
6. Y253H | F | T1121C | GCTGGGCGGGGGCCAGC | 17 | 62 |
7. Y253F | F | A1122T | CTGGGCGGGGGCCAGTT | 17 | 55 |
8. E255K | F | G1127A | GCGGGGGCCAGTACGGGA | 18 | 68 |
9. E255V | F | A1128T | GCGGGGGCCAGTACGGGGT | 19 | 58 |
244 R | R(1–9) | – | GCCAATGAAGCCCTCGGAC | 19 | |
10. F311L | F | T932C | CACCCGGGAGCCCCCGC | 17 | 62 |
– | R(10) | – | CCCCTACCTGTGGATGAAGT | 20 | |
11. T315I | F | C1308T | GCCCCCGTTCTATATCATCAT | 21 | 63.4 |
12. F317L | F | C1315G | CCGTTCTATATCATCACTGAGTTG | 24 | 54 |
315 R | R(11–12) | GGATGAAGTTTTTCTTCTCCAG | 22 | ||
13. M343T | F | T1392C | GTGGTGCTGCTGTACAC | 17 | 62 |
14. M351T | F | T1416C | CCACTCAGATCTCGTCAGCCAC | 22 | 70 |
351 R1 | R (13–14) | GCCCTGAGACCTCCTAGGCT | 20 | ||
15. E355G | – | A1428G | GTCAGCCATGGAGTACCTAGG | 21 | 56 |
16. F359V | F | T1439G | GAGTACCTAGAGAAGAAAAACG | 22 | 50 |
351 R2 | R (15–16) | ATGCCCAAAGCTGGCTTTG | 19 | ||
17. H396R | F | A1551G | GGACACCTACACAGCCCG | 18 | 62.5 |
369 R | R(17) | GGACACCTACACAGCCCG | 18 | ||
18. F486S | F | T1821C | TCTGACCGGCCCTCCTC | 17 | 62 |
486 R | R(18) | AGCTTTCTGGTCTCAGGA | 18 |
Substitutions of amino acids; positions according to GenBank no. AAB60394for ABL type 1a.
Changes of nucleotide; positions according to GenBank no.M14752.
L (bp) = Primer length in base pairs.
A Tm = Annealing temperature in degree Celsius.