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. Author manuscript; available in PMC: 2013 Feb 11.
Published in final edited form as: Biochemistry. 2008 Sep 25;47(42):11144–11157. doi: 10.1021/bi800966v

Table 3.

Helix 2 Dipole Moments for hGrx1 and hGrx2a

Grx
structure
dipole
moment (D)
helix–thiolate
angle (deg)
component of
dipole (D)
hGrx1 (1) 182 24.4 166
hGrx1 (6) 170 19.7 160
hGrx1 (16) 177 19.2 167
hGrx1 (20) 168 24.4 153
hGrx2 213 10.6 209
a

Partial PDB files of hGrx1 [1JHB (23)] and hGrx2 [2FLS (39)] were submitted to the Protein Dipole Moments Server [http://bioportal.weizmann.ac.il/dipol/ (40)] to calculate the dipole moment of helix 2, as well as the angle between the helix and catalytic cysteine (see Experimental Procedures). For hGrx1, the number in parentheses indicates the specific NMR structure shown previously to predict the empirically observed catalytic cysteine pKa of approximately 3.5 (30). The component of each dipole directed toward the catalytic cysteine was calculated by multiplying the dipole moment by the cosine of the angle formed by the intersection of the helix axis with a line projecting from the base of the helix to the catalytic cysteine.