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. 2004 Feb 13;101(8):2265–2269. doi: 10.1073/pnas.0308332100

Table 2. Selected dihedral angles (in degrees) for the BP-1 and BP-2 complexes.

Angle* BP-1 BP-2
χ 219.5 268.1
α′ 156.8 -85.1
β′ 107.0 -47.2
N6-C10-C9-O9 37.4 66.2
O9-C9-C8-O8 -54.4 -57.6
O8-C8-C7-O7 -84.8 -83.4

In both BP-1 and BP-2, the partially saturated ring assumes a distorted half-chair conformation. In BP-1, the C10-N6 bond linking the hydrocarbon to the base makes an angle of ≈50° with the plane of the aromatic rings, corresponding to an orientation for this bond that is about midway between axial and equatorial; whereas, in BP-2, this bond is pseudoequatorial and makes an ≈25° angle with the aromatic system. In both structures, the 7- and 8-hydroxyl groups are close to pseudoequatorial, and the 9-hydroxyl group is pseudoaxial. This orientation of the 9-hydroxyl group closely resembles that proposed in the NMR solution structure of a DNA duplex containing a cis opened (10R) BP tetrahydroepoxide dA adduct (PDB accession code 1N8C, Fig. 3A) that lacked the 7- and 8-hydroxyl groups on the tetrahydro ring (6).

*

Angles are defined as follows: χ = O4′-C1′-N9-C4; α′ = N1-C6-N6-C10(BP); β′ = C6-N6-C10(BP)-C9(BP).