TABLE 2 .
Gene designation | Name | Fold change (edge) | Fold change (center) |
---|---|---|---|
Type III secretion system | |||
PA0044 | exoT | −3.5 ± 1.1 | −3.3 ± 1.0 |
PA1706 | pcrV | −10.2 ± 0.9 | −5.9 ± 1.5 |
PA1708 | popB | −9.0 ± 1.1 | −11.0 ± 1.1 |
PA1709 | popD | −6.0 ± 1.4 | −3.2 ± 1.1 |
PA1710 | exsC | −5.9 ± 1.1 | −9.3 ± 1.4 |
PA1711 | exsE | −4.2 ± 1.3 | −3.3 ± 1.2 |
PA1713 | exsA | −6.4 ± 1.1 | −8.4 ± 1.1 |
PA1717 | pscD | −10.2 ± 1.2 | −12.0 ± 3.4 |
PA1721 | pscH | −12.3 ± 1.5 | −4.9 ± 1.3 |
PA2191 | exoY | −6.8 ± 1.9 | −3.1 ± 1.0 |
Type II secretion system | |||
PA1148 | toxA | 3.1 ± 1.1 | 5.4 ± 1.8 |
PA3096 | xcpY | 4.6 ± 1.4 | 2.2 ± 0.8 |
PA3104 | xcpP | 7.1 ± 1.3 | 8.9 ± 2.5 |
PA3724 | lasB | 72.6 ± 2.5 | 13.8 ± 3.3 |
PA4813 | lipC | 5.1 ± 1.5 | 3.6 ± 1.4 |
Pyoverdine biosynthesis | |||
PA2385 | pvdQ | 5.1 ± 1.3 | −7.7 ± 2.4 |
PA2399 | pvdD | 3.3 ± 1.1 | −6.2 ± 2.1 |
PA2426 | pvdS | 6.1 ± 1.6 | −5.7 ± 2.1 |
Pyochelin biosynthesis | |||
PA4221 | fptA | 4.3 ± 1.5 | −4.9 ± 2.3 |
PA4224 | pchG | 3.6 ± 1.1 | −4.5 ± 1.8 |
PA4226 | pchE | 8.2 ± 1.6 | −3.3 ± 1.1 |
PA4228 | pchD | 4.5 ± 1.3 | −4.5 ± 2.1 |
PA4229 | pchC | 6.6 ± 1.7 | −7.9 ± 2.8 |
Phenazine biosynthesis | |||
PA1900 | phzB2 | −3.3 ± 1.1 | −3.9 ± 1.0 |
PA4209 | phzM | −4.6 ± 1.4 | −6.8 ± 3.2 |
PA4210 | phzA1 | −4.9 ± 1.5 | −2.9 ± 1.1 |
PA4211 | phzB1 | −5.4 ± 1.8 | −9.0 ± 2.0 |
PA4213 | phzD1 | −3.9 ± 1.1 | −6.9 ± 1.3 |
PA4216 | phzG1 | −6.3 ± 1.5 | −8.4 ± 2.3 |
Adaptation and resistance | |||
PA1178 | oprH | 1,173.0 ± 21.5 | 189.0 ± 14.5 |
PA1179 | phoP | 181.9 ± 6.8 | 89.0 ± 19.1 |
PA1797 | 4.2 ± 1.9 | 24.5 ± 6.5 | |
PA3552 | arnB | 188.8 ± 15.7 | 82.6 ± 33.9 |
PA4777 | pmrB | 3.2 ± 1.4 | 24.4 ± 7.9 |