Table 1. TSD 1278 HEXA primers.
Method | Primer | Sequence | Concentration, nM | Tm*, °C | ΔTm |
---|---|---|---|---|---|
Symmetric PCR | TSD1 | 5′-CCTTCTCTCTGCCCCCTGGT-3′ | 1,000 | 64.8 | 0 |
TSD2 | 5′-GCCAGGGGTTCCACTACGTAGA-3′ | 1,000 | 64.3 | ||
Conventional asymmetric PCR | TSD1 | 5′-CCTTCTCTCTGCCCCCTGGT-3′ | 25 | 58.9 | -5 |
TSD2 | 5′-GCCAGGGGTTCCACTACGTAGA-3′ | 1,000 | 64.3 | ||
LATE-PCR† | Modified TD1 | 5′-GCCCTTCTCTCTGCCCCCTGGT-3′ | 25 | 64.0 | 0
|
TSD2 | 5′-GCCAGGGGTTCCACTACGTAGA-3′ | 1,000 | 64.3 |
Concentration-adjusted Tm calculated according to the nearest-neighbor formula.
Nucleotides underlined and in bold were added to match Tm values.