Table 1.
Gene | Target Sequence (Flanked by Underlined TALEN Binding Sites) | Cell Linea | Number of Clones Screened |
Number of Mutants |
Efficiency of Mutation |
---|---|---|---|---|---|
AKT2 | TCCCTTCCTGCCTCATTTCAGGTGAATACATCAAGACCTGGAGGCCA | HUES 9 | 192 | 17 | 8.9% |
AKT2 E17K | TCCCTTCCTGCCTCATTTCAGGTGAATACATCAAGACCTGGAGGCCA | HUES 9 | 192 | 3b | 1.6% |
ANGPTL3 | TCAAAACTTGAAAGCCTCCTAGAAGAAAAAATTCTACTTCAACAAAA | HUES 9 | 424 | 84 | 19.8% |
APOB | TAAGCGACTGGCTGCCTATCTTATGTTGATGAGGAGTCCTTCACA | HuH-7 | 126 | 9 | 7.1% |
ATGL | TTGCTGGCGTTGCCCCCCGCCCGCCCCCACGGCCCAGAGGACAAGGA | HUES 9 | 192 | 28 | 14.6% |
C6orf106 | TGGAGGGCATGGACGTAGACCTGGACCCGGAGCTGATGCAGAAGTTCA | HUES 9 | 216 | 13 | 6.0% |
CIITA | TAACAGCGATGCTGACCCCCTGTGCCTCTACCACTTCTATGACCAGA | BJRiPS | 292 | 37 | 12.7% |
CELSR2 | TGCTGGCTCGGCTGCCCTGAGGTTGCTCAATCAAGCACAGGTTTCAA | HUES 1 | 506 | 18 | 3.5% |
CFTR | TGGAATCACACTGAGTGGAGGTCAACGAGCAAGAATTTCTTTAGCA | CF-RiPS | 140 | 3 | 2.1% |
GLUT4 | TGGTCCTTGCTGTGTTCTCTGCGGTGCTTGGCTCCCTGCAGTTTGGGTA | HUES9 | 155 | 52 | 33.5% |
LINC00116 | TCAGAGAGGACACTGCAGTTGTCCGTGCTAGTAGCCTTCGCTTCTGGA | HUES 9 | 88 | 26 | 29.5% |
NLRC5 | TGGAGCTGTCTTGTGAGGCTGCTCACCAAAGACCCAGAATGGCTGAA | BJ-RiPS | 83 | 6 | 7.2% |
PLIN1 | TGACAACGTGGTGGACACAGTGGTGCATTACGTGCCGGTGAGTACCA | HUES 9 | 293 | 70 | 23.8% |
PLIN1 | TGACAACGTGGTGGACACAGTGGTGCATTACGTGCCGGTGAGTACCA | BJ-RiPS | 439 | 29 | 6.6% |
SORT1 (exon 2) | TGATGATCTCAGAGGCTCAGTATCCTTGTCCTGGGTTGGAGATAGCA | HUES 1 | 576 | 128 | 22.2% |
SORT1 (exon 3) | TGGTAATTATGACTTTTGGACAGTCCAAGCTATATCGAAGGTGAGATCA | HUES 9 | 192 | 21 | 10.9% |
TRIB1 | TCTTCAAGCAGATTGTCTCCGCCGTCGCCCACTGCCACCAGTCAGCCA | HUES 9 | 169 | 41 | 24.2% |
TTN | TTGAGGCTCCTTAATGATGACAGAAGAGAAGGCTTCTCTGGGTTCA | BJ-RiPS | 250 | 17 | 6.8% |
HUES 1 and HUES 9 are human embryonic stem cell lines (Cowan et al., 2004); BJ-RiPS and CF-RiPS are induced pluripotent stem cell lines (Warren et al., 2010); HuH-7 cells are cultured human hepatocellular carcinoma cells
Successfully inserted E17K knock-in mutation using single-stranded DNA oligonucleotide