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. Author manuscript; available in PMC: 2014 Feb 7.
Published in final edited form as: Cell Stem Cell. 2012 Dec 13;12(2):238–251. doi: 10.1016/j.stem.2012.11.011

Table 1.

Targeting Efficiency of TALENs at 16 Loci in 15 Genes in Various Cell Types

Gene Target Sequence (Flanked by Underlined TALEN Binding Sites) Cell Linea Number of
Clones
Screened
Number
of
Mutants
Efficiency of
Mutation
AKT2 TCCCTTCCTGCCTCATTTCAGGTGAATACATCAAGACCTGGAGGCCA HUES 9 192 17 8.9%
AKT2 E17K TCCCTTCCTGCCTCATTTCAGGTGAATACATCAAGACCTGGAGGCCA HUES 9 192 3b 1.6%
ANGPTL3 TCAAAACTTGAAAGCCTCCTAGAAGAAAAAATTCTACTTCAACAAAA HUES 9 424 84 19.8%
APOB TAAGCGACTGGCTGCCTATCTTATGTTGATGAGGAGTCCTTCACA HuH-7 126 9 7.1%
ATGL TTGCTGGCGTTGCCCCCCGCCCGCCCCCACGGCCCAGAGGACAAGGA HUES 9 192 28 14.6%
C6orf106 TGGAGGGCATGGACGTAGACCTGGACCCGGAGCTGATGCAGAAGTTCA HUES 9 216 13 6.0%
CIITA TAACAGCGATGCTGACCCCCTGTGCCTCTACCACTTCTATGACCAGA BJRiPS 292 37 12.7%
CELSR2 TGCTGGCTCGGCTGCCCTGAGGTTGCTCAATCAAGCACAGGTTTCAA HUES 1 506 18 3.5%
CFTR TGGAATCACACTGAGTGGAGGTCAACGAGCAAGAATTTCTTTAGCA CF-RiPS 140 3 2.1%
GLUT4 TGGTCCTTGCTGTGTTCTCTGCGGTGCTTGGCTCCCTGCAGTTTGGGTA HUES9 155 52 33.5%
LINC00116 TCAGAGAGGACACTGCAGTTGTCCGTGCTAGTAGCCTTCGCTTCTGGA HUES 9 88 26 29.5%
NLRC5 TGGAGCTGTCTTGTGAGGCTGCTCACCAAAGACCCAGAATGGCTGAA BJ-RiPS 83 6 7.2%
PLIN1 TGACAACGTGGTGGACACAGTGGTGCATTACGTGCCGGTGAGTACCA HUES 9 293 70 23.8%
PLIN1 TGACAACGTGGTGGACACAGTGGTGCATTACGTGCCGGTGAGTACCA BJ-RiPS 439 29 6.6%
SORT1 (exon 2) TGATGATCTCAGAGGCTCAGTATCCTTGTCCTGGGTTGGAGATAGCA HUES 1 576 128 22.2%
SORT1 (exon 3) TGGTAATTATGACTTTTGGACAGTCCAAGCTATATCGAAGGTGAGATCA HUES 9 192 21 10.9%
TRIB1 TCTTCAAGCAGATTGTCTCCGCCGTCGCCCACTGCCACCAGTCAGCCA HUES 9 169 41 24.2%
TTN TTGAGGCTCCTTAATGATGACAGAAGAGAAGGCTTCTCTGGGTTCA BJ-RiPS 250 17 6.8%
a

HUES 1 and HUES 9 are human embryonic stem cell lines (Cowan et al., 2004); BJ-RiPS and CF-RiPS are induced pluripotent stem cell lines (Warren et al., 2010); HuH-7 cells are cultured human hepatocellular carcinoma cells

b

Successfully inserted E17K knock-in mutation using single-stranded DNA oligonucleotide