Table 2. The cpDNA haplotypes detected in Ephedra species.
| Hap. | trnT-trnF (668 bp) | trnS-trnfM (509 bp) | ||||||||||||||||||||||||||||||||
| 34 | 66 | 77 | 100 | 106 | 111 | 180 | 224 | 234 | 298 | 314 | 324 | 333 | 398 | 437 | 489 | 524 | 543 | 615 | 616 | 627 | 666 | 672 | 698 | 944–960 | 973 | 991 | 994–1008 | 1011 | 1089–1096 | 1103 | 1113–1139 | 1140–1158 | 1161 | |
| H1 | C | A | A | - | G | C | G | A | A | A | C | G | A | T | T | T | C | A | T | A | - | - | G | G | - | T | T | § | A | □ | T | - | - | A |
| H2 | C | A | A | - | G | C | G | A | A | A | C | G | A | T | T | T | C | A | T | A | - | - | G | G | - | T | G | § | A | □ | T | - | - | A |
| H3 | C | A | A | - | G | C | G | A | A | C | C | G | A | T | T | T | C | A | T | A | - | - | G | G | - | T | T | ◊ | A | □ | T | - | - | A |
| H4 | C | A | A | - | G | C | G | A | A | A | C | G | A | T | T | T | C | A | T | A | G | - | G | G | - | T | T | ◊ | A | □ | T | - | - | A |
| H5 | C | A | A | - | G | C | G | A | A | A | C | G | A | T | T | T | C | A | T | A | - | - | G | G | - | T | T | ◊ | A | □ | T | - | - | A |
| H6 | C | A | A | - | G | G | G | A | A | A | A | G | A | T | T | T | C | G | T | A | - | - | G | T | - | T | T | * | G | - | T | - | - | T |
| H7 | C | A | A | A | G | G | G | A | A | A | C | G | A | T | T | T | C | G | T | A | - | - | G | T | # | T | T | ◊ | G | - | T | - | - | A |
| H8 | C | A | A | - | G | G | G | A | A | A | A | G | A | T | T | T | C | G | T | A | - | - | G | T | - | T | T | Δ | A | - | T | - | - | T |
| H9 | C | A | A | - | G | C | G | A | A | A | C | G | A | T | G | T | C | A | T | A | - | - | G | G | - | T | T | ◊ | A | T | - | - | A | |
| H10 | C | A | A | - | G | G | G | A | A | A | A | G | A | C | T | T | C | G | T | A | - | - | G | T | - | T | T | * | G | - | T | - | - | T |
| H11 | C | A | A | - | G | C | G | A | A | A | C | G | A | T | G | T | C | A | T | A | - | C | G | G | - | T | T | ◊ | A | □ | T | - | - | A |
| H12 | C | A | A | - | G | C | G | A | A | A | C | G | A | T | G | C | C | A | T | A | - | - | G | G | - | T | T | ◊ | A | □ | T | - | - | A |
| H13 | A | A | A | - | G | C | G | A | A | A | C | G | A | T | G | C | C | A | T | A | - | - | G | G | - | T | T | ◊ | A | □ | T | - | - | A |
| H14 | C | A | A | - | G | G | G | A | A | A | A | G | A | T | T | T | C | G | T | A | - | - | G | T | - | T | T | * | G | - | T | † | - | T |
| H15 | C | A | A | - | G | G | G | A | A | A | A | G | C | T | T | T | C | G | T | A | - | - | G | T | - | T | T | * | G | - | T | - | - | T |
| H16 | C | A | A | A | G | G | A | A | A | A | C | G | A | T | T | T | C | G | T | A | - | - | G | T | - | A | T | ◊ | G | - | T | - | - | A |
| H17 | C | A | A | A | G | G | G | A | A | A | C | G | A | T | T | T | C | G | T | A | - | - | G | T | - | T | T | ◊ | G | - | T | - | - | A |
| H18 | C | A | A | A | G | G | A | A | A | A | C | G | A | T | T | T | C | G | T | A | - | - | G | T | # | T | T | ◊ | G | - | T | - | - | A |
| H19 | C | G | A | A | G | G | G | A | A | A | C | G | A | T | T | T | C | G | T | A | - | - | G | T | # | T | T | ◊ | G | - | T | - | - | A |
| H20 | C | A | T | A | G | G | G | A | A | A | C | G | A | T | T | T | C | G | T | C | - | - | G | T | - | T | T | ◊ | G | - | T | - | - | A |
| H21 | C | A | T | A | G | G | G | A | A | A | C | G | A | T | T | T | C | G | T | A | - | - | G | T | - | T | T | ◊ | G | - | T | - | - | A |
| H22 | C | A | A | A | G | G | G | A | A | A | C | G | A | T | T | T | C | G | T | A | - | - | A | T | - | T | T | ◊ | G | - | T | - | - | A |
| H23 | C | A | A | - | G | G | G | A | A | A | C | G | A | T | T | T | C | G | T | A | - | - | G | T | - | T | T | ◊ | G | - | C | - | - | A |
| H24 | C | A | A | - | G | G | G | A | A | A | C | G | A | T | T | T | C | G | T | A | - | - | G | T | - | T | G | ◊ | G | - | C | - | - | A |
| H25 | C | A | A | - | G | G | G | A | A | A | C | G | A | T | T | T | C | G | T | A | - | - | G | T | - | T | T | ◊ | G | - | C | - | ‡ | A |
| H26 | C | A | A | - | A | G | G | G | T | A | C | - | A | T | T | T | T | A | G | A | - | - | G | T | - | T | G | ◊ | G | □ | T | - | - | A |
#, TCACAAACTTAATAAGT; §, TTGAACGGATTAAAA; ◊, TTGAACGGA------; *, TTAAACGGA------; Δ, ---------------; □, TAAGAATA; †, TATTAAGACAATAAGAATAAGACATAT; ‡, TAATAAGACATAATATGTC. Numbers above lanes indicate positions of the nucleotides in the alignment.