Table 2. hAFLP types and Sequence Types (STs) of Ft strains and Ft near neighbor species DNA (shown in bold) and by in silico analysis of WGS (shown in italics).
| Strain [Genbank Acc#] | hAFLP | ST | iglC | fopA | tul4-FT900 | pdpD | acpA | pepO | migR | gyr | speA | FT82 | ||||||||||
| subspecies tularensis | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | ||
| Schu S4 [AJ749949.2] | a | A | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| FSC198 [AM286280.1] | a | A | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| FSC033 [AAYE00000] | a | A | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| MA00-2987 [ABRI00000] | a | A | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| NE061598 [CP001633] | c | C | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| Scherm | c | C | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| tularensis FRAN005 | c | C | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| tularensis FRAN006 | c | C | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| tularensis FRAN007 | c | C | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| tularensis FRAN008 | c | C | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| tularensis FRAN009 | c | C | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| tularensis FRAN011 | c | C | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| tularensis FRAN015 | c | C | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 1 | 1 | 1 | 1 |
| WY96 [CP000608.1] | b | B | 1 | 2 | 1 | 3 | 1 | 2 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 2 |
| ATCC 6223 | B | B | 1 | 2 | 1 | 3 | 1 | 2 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 2 | 2 |
| subspecies holarctica | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | ||
| LVS [AM233362.1] | d | D | 1 | 2 | 1 | 2 | 1 | 3 | n | n | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 3 | 3 | 3 |
| 14LVS | d | D | 1 | 2 | 1 | 2 | 1 | 3 | n | n | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 3 | 3 | 3 |
| LVSG | d | D | 1 | 2 | 1 | 2 | 1 | 3 | n | n | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 3 | 3 | 3 |
| JAP | d | L | 1 | 2 | 1 | 2 | 1 | 3 | n | n | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 4 | 3 | 3 |
| FSC257 [AAUD00000] | d | F | 1 | 3 | 1 | 2 | 3 | 4 | Δ | Δ | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 3 | 3 | 3 |
| VT68 | E | K | 1 | 2 | 1 | 2 | 1 | 3 | n | n | 1 | 2 | 1 | 1 | 1 | 2 | 2 | 2 | 2 | 3 | 3 | 3 |
| holarctica FRAN012 | e | K | 1 | 2 | 1 | 2 | 1 | 3 | n | n | 1 | 2 | 1 | 1 | 1 | 2 | 2 | 2 | 2 | 3 | 3 | 3 |
| KY99-3387 | e | K | 1 | 2 | 1 | 2 | 1 | 3 | n | n | 1 | 2 | 1 | 1 | 1 | 2 | 2 | 2 | 2 | 3 | 3 | 3 |
| OSU18 [CP000437.1] | e | E | 1 | 2 | 1 | 5 | 1 | 3 | Δ | Δ | 1 | 2 | 1 | 1 | 1 | 2 | 2 | 2 | 2 | 3 | 3 | 3 |
| FSC200 [AASP00000] | e | J | 1 | 2 | 1 | 2 | 1 | 3 | Δ | Δ | 1 | 2 | 1 | 1 | 1 | 2 | 2 | 6 | 2 | 3 | 3 | 3 |
| FSC022 [AAYD00000] | f | G | 1 | 2 | 1 | 2 | 1 | 3 | Δ | Δ | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 5 | 5 | 3 | 3 |
| URFT1 [ABAZ00000] | g | H | 1 | 2 | 1 | 2 | 1 | 3 | Δ | Δ | 1 | 2 | 2 | 4 | 1 | 2 | 1 | 1 | 3 | 6 | 3 | 3 |
| FTNF002-00 [CP00083.1] | h | I | 1 | 2 | 1 | 2 | 1 | 3 | Δ | Δ | 1 | 2 | 2 | 4 | 1 | 2 | 1 | 1 | 2 | 3 | 3 | 3 |
| 425 | n | M | 1 | 2 | 1 | 4 | 1 | 3 | n | n | 1 | 2 | 1 | 1 | 1 | 2 | 4 | 4 | 2 | 3 | 4 | 4 |
| OR96-03246 | o | R | 1 | 2 | 1 | 4 | 1 | 3 | n | n | 1 | 2 | 1 | 1 | 1 | 2 | 3 | 3 | 2 | 3 | 4 | 4 |
| subspecies mediasiatica | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | ||
| FSC147 [CP000915.1] | i | N | 1 | 4 | 1 | 6 | 3 | 4 | 1 | 3 | 1 | 1 | 3 | 3 | 1 | 1 | 5 | 5 | 4 | 7 | 3 | 5 |
| subspecies novicida | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | ||
| KM14S | k | O | 1 | 2 | 1 | 2 | 2 | 5 | 1 | 4 | 1 | 3 | 1 | 6 | 1 | 3 | n | n | n | n | 4 | 6 |
| GB2 | k | O | 1 | 2 | 1 | 2 | 2 | 5 | 1 | 4 | 1 | 3 | 1 | 6 | 1 | 3 | n | n | n | n | 4 | 6 |
| CG21 | k | O | 1 | 2 | 1 | 2 | 2 | 5 | 1 | 4 | 1 | 3 | 1 | 6 | 1 | 3 | n | n | n | n | 4 | 6 |
| U112 [CP000439.1] | k | O | 1 | 2 | 1 | 2 | 2 | 5 | 1 | 4 | 1 | 3 | 1 | 6 | 1 | 3 | Δ | Δ | Δ | Δ | 4 | 6 |
| FTE [ABSS00000] | k | O | 1 | 2 | 1 | 2 | 2 | 5 | 1 | 4 | 1 | 3 | 1 | 6 | 1 | 3 | Δ | Δ | Δ | Δ | 4 | 6 |
| FTG [ABXZ00000] | k | U | 1 | 2 | 1 | 2 | 2 | 5 | 1 | 4 | 1 | 3 | 1 | 5 | 1 | 4 | Δ | Δ | Δ | Δ | 4 | 6 |
| Fx1 [CP002557] | j | V | 1 | 5 | 1 | 8 | 1 | 8 | 1 | 4 | 1 | 4 | 1 | 1 | 1 | 5 | Δ | Δ | 2 | 10 | 4 | 8 |
| 3523 [CP002558] | m | S | 1 | 8 | 1 | 9 | 1 | 9 | 1 | 5 | 1 | 5 | 1 | 7 | 1 | 6 | Δ | Δ | Δ | Δ | 4 | 7 |
| GA99-3548 [ABAH00000] | l | P | 1 | 6 | 1 | 8 | 1 | 7 | 1 | 6 | 1 | 4 | 1 | 5 | 1 | 4 | 3 | 7 | 2 | 8 | n | n |
| GA99-3549 [AAYF00000] | p | Q | 2 | 7 | 1 | 7 | 1 | 6 | n | n | 1 | 4 | 1 | 6 | 1 | 4 | 1 | 8 | 2 | 9 | 4 | 6 |
| F. philomiragia | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | FLT | GT | ||
| ATCC 25015 [ABYY00000] | – | – | n | n | n | n | n | n | 1 | 8 | n | n | n | n | n | n | n | n | n | n | n | n |
| ATCC 25016 | – | – | n | n | n | n | n | n | 1 | 9 | n | n | n | n | n | n | n | n | n | n | n | n |
| ATCC 25017 [CP000937.1] | – | – | n | n | n | n | n | n | 1 | 9 | n | n | n | n | n | n | n | n | n | n | n | n |
Corresponding Genbank accession numbers are in brackets. FLT: Fragment Length Type; GT: sequence genotype of individual locus; Δ: strain is deficient of this locus; n: no PCR product or sequence detected.