Table 1. Data-collection, processing and refinement statistics for crystal of SeMet derivative of NlpC/P60_2.
Experimentalconditions | |
X-ray source | ESRF ID23-1 |
Wavelength (Å) | 0.9796 |
Temperature (K) | 100 |
Detector | CCD ADSC |
Crystal parameters | |
Space group | P21 |
Unit cell parameters (Å and °): | |
a | 65.81 |
b | 60.61 |
c | 66.13 |
β | 107.66 |
Resolution (Å) | 32.4–1.38 (1.40–1.38) |
Data processing | |
No. of reflections | 715274 |
No. of unique reflections # | 182049 |
Completeness (%) | 95.9 (83.5) |
Mean I/σ(I) | 37.5 (3.5) |
Rmerge ## | 0.051 (0.449) |
Redundancy | 7.3(5.6) |
Structure refinement | |
Resolution range (Å) | 32.39–1.38 |
Rwork | 0.127 (0.1567) |
Rfree | 0.152 (0.1782) |
No. of reflections in test set ### | 3825 |
No. of reflections used in refinement ### | 178224 |
Average B factor (Å2) | |
Overall | 18.3 |
Atoms in protein | 14.4 |
Atoms of ligands | 39.1 |
Atoms of solvent | 20.9 |
R.M.S. deviation, bond lengths (Å) | 0.009 |
R.M.S. deviation, bond angles (°) | 1.203 |
Ramachandran statistics | |
Permitted (%) | 2.9 |
Favored (%) | 97.1 |
Values for the highest resolution shell are given in parentheses.
R mearged = Σhkl Σi|Ii(hkl) – <I(hkl)>|/Σhkl ΣiIi(hkl), where Σhkl denotes the sum over all reflections and Σi the sum over all equivalent and symmetry related reflections [44].
Friedel pairs of reflections were not merged to preserve the anomalous signal.
For the participation in the test set both reflections comprising a Friedel pair were selected.