Table 1. Diversity indices estimated with 10 Y-STRs and Y-SNP haplogroup diversities, excluding those chromosomes that most likely have been recently introduced by Europeans (see text for excluded haplogroups).
| Y-STRs | Y-SNPs | ||||
|---|---|---|---|---|---|
| |
|
Gene diversity |
MNPD a |
WIMP |
Gene diversity |
| Equatorial guinea | 95 | 0.9915±0.0036 | 4.643449±2.297308 | 3.0191407 | 0.3351±0.0605 |
| E1b1a*-M2 | 37 | 0.9805±0.0115 | 3.321321±1.745204 | — | — |
| E1b1a7-M191 | 40 | 0.9692±0.0165 | 2.846154±1.531191 | — | — |
| R1b1a*-V88 | 9 | 1.0000±0.0524 | 2.972222±1.712433 | — | — |
| Uganda | 117 | 0.9841±0.0040 | 5.802829±2.795409 | 3.1275240 | 0.7974±0.0183 |
| A3b2-M13 | 39 | 0.9379±0.0275 | 3.260459±1.716166 | — | — |
| B2a1*-M218 | 20 | 0.8842±0.0416 | 3.905263±2.043998 | — | — |
| B2b*-M112 | 13 | 0.7692±0.1031 | 3.102564±1.721209 | — | — |
| E1b1a*-M2 | 8 | 0.8571±0.1083 | 2.857143±1.678080 | — | — |
| E1b1a7-M191 | 6 | 0.9333±0.1217 | 2.800000±1.714643 | — | — |
| E1b1b1*-M35 | 7 | 0.7143±0.1267 | 2.285714±1.420252 | — | — |
| E2a-M41 | 13 | 0.8974±0.0537 | 3.666667±1.983080 | — | — |
| Guinea-bissau | 29 | 0.9975±0.0099 | 5.246305±2.611534 | 3.8374383 | 0.4064±0.1012 |
| E1b1a*-M2 | 22 | 0.9957±0.0153 | 4.194805±2.165882 | — | — |
| Gabon (Bantu) | 794 | 0.9917±0.0009 | 4.026361±2.045803 | 3.7290481 | 0.3564±0.0211 |
| B2a-M150 | 49 | 0.9694±0.0127 | 4.088163±2.072229 | — | — |
| E*-M96 | 10 | 1.0000±0.0447 | 3.377778±1.888082 | — | — |
| E1b1a-M2 | 631 | 0.9880±0.0013 | 3.725565±1.883845 | — | — |
| E2-M75 | 49 | 0.9651±0.0124 | 3.379252±1.761024 | — | — |
| R1b1*-P25 | 44 | 0.9873±0.0089 | 3.955603±2.018674 | — | — |
| Gabon (Pygmies) | 33 | 0.9356±0.0259 | 6.507576±3.157549 | 4.3515151 | 0.5739±0.0902 |
| B2b-M112 | 21 | 0.8619±0.0551 | 5.695238±2.842610 | — | — |
| Cameroon (Bantu) | 28 | 0.9841±0.0131 | 5.187831±2.588411 | 3.1802722 | 0.4735±0.0790 |
| B2a-M150 | 8 | 0.9643±0.0772 | 3.714286±2.095457 | — | — |
| E1b1a-M2 | 19 | 0.9708±0.0239 | 3.122807±1.693930 | — | — |
| Cameroon (Pygmies) | 27 | 0.9630±0.0204 | 5.150997±2.575040 | 3.6851854 | 0.6980±0.0650 |
| B2b-M112 | 7 | 0.9524±0.0955 | 5.047619±2.787667 | — | — |
| E1b1a-M2 | 13 | 0.9359±0.0507 | 3.192308±1.762954 | — | — |
| Cabinda | 68 | 0.9838±0.0061 | 4.110623±2.072840 | 2.8441449 | 0.2647±0.0667 |
| B2a1a-M109 | 6 | 0.9333±0.1217 | 3.000000±1.816590 | — | — |
| E1b1a*-M2 | 34 | 0.9626±0.0170 | 2.811052±1.521228 | — | — |
| E1b1a7-M191 | 24 | 0.9529±0.0309 | 2.826087±1.544030 | — | — |
Abbreviations: MNPD, mean number of pairwise differences; WIMP, weighted mean intralineage mean pairwise difference; Y-SNP, single-nucleotide polymorphism on chromosome Y; Y-STR, short tandem repeats on chromosome Y.
a
MNPD within haplogroups was calculated for haplogroups with n>5.