Table 4.
Accession numbers and reference of 106 sequences used in the phylogenetic tree
| S No. | NCBI accession No. | Isolate name | Reference |
|---|---|---|---|
| 1. |
AB017610 |
TA278 |
Okamoto et al., 1998b[8] |
| 2. |
AY823988 |
2 h |
Niel et al., 2005[22] |
| 3. |
AY823989 |
3 h |
Niel et al., 2005[22] |
| 4. |
AY666122 |
HEL32 |
Qiu et al., 2005[11] |
| 5. |
AB017613 |
TUS01 |
Okamoto et al., 1999c [33] |
| 6. |
AF261761 |
PMV |
Hallet et al., 2000[25] |
| 7. |
AB054647 |
Kt-08f |
Muljono et al., 2001[23] |
| 8. |
AB054648 |
Kt-10f |
Muljono et al., 2001[23] |
| 9. |
AF435014 |
KAV |
Heller et al., 2001[26] |
| 10. |
GU797360 |
BIS8-17 |
Unpublished |
| 11. |
DQ187006 |
BM1C-18 |
Unpublished |
| 12. |
AB064595 |
CT23F |
Peng et al., 2002[28] |
| 13. |
AB064596 |
CT25F |
Peng et al., 2002[28] |
| 14. |
AB064597 |
CT30F |
Peng et al., 2002[28] |
| 15. |
AB064604 |
CT39F |
Peng et al., 2002[28] |
| 16. |
AB064598 |
CT43F |
Peng et al., 2002[28] |
| 17. |
NC014075 |
CT44F |
Peng et al., 2002[28] |
| 18. |
AF122913 |
GH1 |
Mushahwar et al., 1999[3] |
| 19. |
AF122916 |
JA1 |
Erker et al., 1999[5] |
| 20. |
AF122918 |
JA2b |
Erker et al., 1999[5] |
| 21. |
AF122917 |
JA4 |
Erker et al., 1999[5] |
| 22. |
AF122915 |
JA9 |
Erker et al., 1999[5] |
| 23. |
AF122919 |
JA10 |
Erker et al., 1999[5] |
| 24. |
AF122914.3 |
JA20 |
Erker et al., 1999[5] |
| 25. |
AB064599 |
JT03F |
Peng et al., 2002[28] |
| 26. |
AB064600 |
JT05F |
Peng et al., 2002[28] |
| 27. |
AB064601 |
JT14F |
Peng et al., 2002[28] |
| 28. |
AB064602 |
JT19F |
Peng et al., 2002[28] |
| 29. |
AB064606 |
JT33F |
Peng et al., 2002[28] |
| 30. |
NC_014076 |
JT34F |
Peng et al., 2002[28] |
| 31. |
AB064603 |
JT41F |
Peng et al., 2002[28] |
| 32. |
AY026465 |
L01 |
Liu et al., 2002[43] |
| 33. |
AY026466 |
L02 |
Liu et al., 2002[43] |
| 34. |
AF371370 |
L03 |
Liu et al., 2002[43] |
| 35. |
NC014069 |
NC014069 |
Unpublished |
| 36. |
AF298585 |
P1C1 |
Unpublished |
| 37. |
AB060597 |
SAa-01 |
Okamoto et al., 2001[23] |
| 38. |
AB060594 |
SAa-10 |
Okamoto et al., 2001[23] |
| 39. |
AB060593 |
SAa-38 |
Okamoto et al., 2001[23] |
| 40. |
AB060592 |
SAa-39 |
Okamoto et al., 2001[23] |
| 41. |
AB060596 |
SAf-09 |
Okamoto et al., 2001[23] |
| 42. |
AB060595 |
SAj-30 |
Okamoto et al., 2001[23] |
| 43. |
AB025946.2 |
SANBAN |
Hijikata et al., 1999[40] |
| 44. |
AM712003 |
Sle1931 |
Leppik et al., 2007[45] |
| 45. |
AM712004 |
Sle1932 |
Leppik et al., 2007[45] |
| 46. |
AM711976| |
Sle1957 |
Leppik et al., 2007[45] |
| 47. |
AM712030 |
Sle2057 |
Leppik et al., 2007[45] |
| 48. |
AM712031 |
Sle2058 |
Leppik et al., 2007[45] |
| 49. |
AM712033 |
Sle2061 |
Leppik et al., 2007[45] |
| 50. |
AM712034 |
Sle2065 |
Leppik et al., 2007[45] |
| 51. |
AM712032 |
Sle2072 |
Leppik et al., 2007[45] |
| 52. |
AF247138 |
T3PB |
Biagini et al., 2000 |
| 53. |
AF345526 |
TCHN-A |
Luo et al., 2002[44] |
| 54. |
AF348409 |
TCHN-B |
Luo et al., 2002[44] |
| 55. |
AF345523 |
TCHN-C1 |
Luo et al., 2002[44] |
| 56. |
AF345527 |
TCHN-C2 |
Luo et al., 2002[44] |
| 57. |
AF345524 |
TCHN-D1 |
Luo et al., 2002[44] |
| 58. |
AF345525 |
TCHN-D2 |
Luo et al., 2002[44] |
| 59. |
AF345522 |
TCHN-E |
Luo et al., 2002[44] |
| 60. |
AF345528 |
TCHN-F |
Luo et al., 2002[44] |
| 61. |
AF345521 |
TCHN-G1 |
Luo et al., 2002[44] |
| 62. |
AF345529 |
TCHN-G2 |
Luo et al., 2002[44] |
| 63. |
AB028668 |
TJN01 |
Ukita et al., 2000[46] |
| 64. |
AB028669 |
TJN02 |
Ukita et al., 2000[46] |
| 65. |
AJ620218 |
TTH3 |
Jelcic et al., 2004[27] |
| 66. |
AJ620226 |
TTH4 |
Jelcic et al., 2004[27] |
| 67. |
AJ620227 |
TTH5 |
Jelcic et al., 2004[27] |
| 68. |
AJ620212 |
TTH6 |
Jelcic et al., 2004[27] |
| 69. |
AJ620230 |
TTH7 |
Jelcic et al., 2004[27] |
| 70. |
AJ620231 |
TTH8 |
Jelcic et al., 2004[27] |
| 71. |
AJ620219 |
TTH9 |
Jelcic et al., 2004[27] |
| 72. |
AJ620213 |
TTH10 |
Jelcic et al., 2004[27] |
| 73. |
AJ620214 |
TTH11 |
Jelcic et al., 2004[27] |
| 74. |
AJ620232 |
TTH13 |
Jelcic et al., 2004[27] |
| 75. |
AJ620228 |
TTH14 |
Jelcic et al., 2004[27] |
| 76. |
AJ620220 |
TTH16 |
Jelcic et al., 2004[27] |
| 77. |
AJ620221 |
TTH17 |
Jelcic et al., 2004[27] |
| 78. |
AJ620215 |
TTH18 |
Jelcic et al., 2004[27] |
| 79. |
AJ620233 |
TTH19 |
Jelcic et al., 2004[27] |
| 80. |
AJ620216 |
TTH20 |
Jelcic et al., 2004[27] |
| 81. |
AJ620217 |
TTH21 |
Jelcic et al., 2004[27] |
| 82. |
AJ620234 |
TTH22g4 |
Jelcic et al., 2004[27] |
| 83. |
AJ620235 |
TTH23 |
Jelcic et al., 2004[27] |
| 84. |
AJ620222 |
TTH25 |
Jelcic et al., 2004[27] |
| 85. |
AJ620223 |
TTH26 |
Jelcic et al., 2004[27] |
| 86. |
AJ620224 |
TTH27 |
Jelcic et al., 2004[27] |
| 87. |
AJ620229 |
TTH29 |
Jelcic et al., 2004[27] |
| 88. |
AJ620225 |
TTH31 |
Jelcic et al., 2004[27] |
| 89. |
FR751471 |
TTV-HD14i |
de Villiers et al., 2011 [47] |
| 90. |
FR751472 |
TTV-HD15a |
de Villiers et al., 2011 [47] |
| 91. |
FR751476 |
TTV-HD16a |
de Villiers et al., 2011 [47] |
| 92. |
FR751488 |
TTV-HD17 |
de Villiers et al., 2011 [47] |
| 93. |
FR751489 |
TTV-HD18a |
de Villiers et al., 2011 [47] |
| 94. |
FR751491 |
TTV-HD19 |
de Villiers et al., 2011 [47] |
| 95. |
FR751492 |
TTV-HD20a |
de Villiers et al., 2011 [47] |
| 96. |
FR751498 |
TTV-HD21 |
de Villiers et al., 2011 [47] |
| 97. |
FR751499 |
TTV-HD22 |
de Villiers et al., 2011 [47] |
| 98. |
FR751500 |
TTV-HD23a |
de Villiers et al., 2011 [47] |
| 99. |
FR751506 |
TTV-HD24a |
de Villiers et al., 2011 [47] |
| 100. |
AB038620 |
TTVsan-s039 |
Takahashi et al., 2000 [48] |
| 101. |
AB038621 |
TTVyon-Kc009 |
Takahashi et al., 2000 [48] |
| 102. |
AF247137 |
TUPB |
Biagini et al., 2000 [49] |
| 103. |
AB050448 |
TYM9 |
Okamoto et al., 2000 [50] |
| 104. |
AF122921 |
US32 |
Erker et al., 1999[5] |
| 105. |
AF122920 |
US35 |
Erker et al., 1999[5] |
| 106. | DQ361268 | ViPi04 | Maggi et al., 2006[24] |