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. 2012 Oct 27;13:275. doi: 10.1186/1471-2105-13-275

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Copyright ©2012 Longabaugh; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Network with shadow links, connectivity layout, and node zone shading. The interactome network has now been reorganized using shadow links and the connectivity layout. Also note that node zone shading has been activated, providing contrasting light backgrounds behind each node zone. Contrast the network overview here with that in Figure 5; the overall network organization is less compact, but the small-scale organization of nodes allows direct comparison of similar proteins. The network magnifier has been set to a medium zoom level to browse the current viewport; note how the overview shows our current location in the full network.