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. 2013 Feb 15;8(2):e56904. doi: 10.1371/journal.pone.0056904

Table 1. Secondary structure quantitation of PhaF based in CD data.

Sample Method α-Helix (%) β-Structures (%) Remainder (%)
PhaF CDNN 32 18 51
CONTIN 29 7 64
CDSSTR 32 11 57
PhaF (40% TFE) CDNN 42 12 46
CONTIN 47 7 46
CDSSTR 55 18 27
C-PhaF CDNN N.D.a N.D. N.D.
CONTIN 1 4 95
CDSSTR 1 13 86
C-PhaF (40% TFE) CDNN N.D. N.D. N.D.
CONTIN 9 7 84
CDSSTR 5 8 87
PhaF (whole protein) Model 44 0 57
Model (accounting for disorder)b 31 0 69

Estimations using the CDNN, CONTIN and CDSSTR procedures, and comparison with that predicted from the three-dimensional model.

a

N.D.: Not determined (poor fitting)

b

Calculations assuming that the helical-predicted stretches 13–17 and 58–91 are disordered in solution in the unligated protein (according to PONDR-FIT procedure).