Table 1.
Gene list | chr | ltrstart | ltrstop | e-value | Score |
---|---|---|---|---|---|
GABBR1 |
chr6 |
29526020 |
29526766 |
0.0 |
1042 |
MAPK10 |
chr4 |
86878290 |
86877559 |
0.0 |
834 |
MAPK10 |
chr4 |
86878341 |
86877841 |
1,00E-160 |
630 |
DLD |
chr7 |
107977734 |
107978228 |
0.0 |
706 |
NRCAM |
chr7 |
107977734 |
107978228 |
0.0 |
706 |
NR3C2 |
chr4 |
148920214 |
148920590 |
1,00E-115 |
464 |
ATM |
chr11 |
107851843 |
107852136 |
2,00E-106 |
430 |
SLC18A1 |
chr8 |
20016820 |
20017144 |
5,00E-83 |
344 |
SLC18A1 |
chr8 |
20017040 |
20017144 |
7,00E-12 |
82 |
FAAH |
chr1 |
46856820 |
46856990 |
2,00E-44 |
202 |
CDC25A |
chr3 |
48377262 |
48377349 |
1,00E-27 |
140 |
MAP4 |
chr3 |
48377349 |
48377262 |
1,00E-27 |
140 |
SHISA5 |
chr3 |
48377262 |
48377349 |
1,00E-27 |
140 |
MAP2 |
chr2 |
210171660 |
210171694 |
2,00E-05 |
58 |
ACTB | chr7 | 5832898 | 5832925 | 0.003 | 50 |
The regulatory regions were taken from Thurman et al. [16]. The LTR sequence ranges (ltrstart, ltrstop), evalues and scores were calculated using the Blastn program [18]. A large fraction of the regulatory regions identified by Thurman et al. [16] were associated with more than one gene and most genes were also associated with more than one regulatory region.