1
|
The queried SNPs chromosome ID
|
CHR25
|
2
|
The queried SNPs genomic location
|
286966
|
3
|
Whether or not the SNP was within a feature
|
Y
|
4
|
Region containing the SNP; either exonic, intronic, or intergenic
|
Exonic
|
5
|
Distance to nearest feature
|
NA
|
6
|
Either the closest feature to the SNP or the feature containing the SNP
|
CDS
|
7
|
The number of different features that the SNP is annotated to
|
2
|
8
|
The number of annotations of the current feature
|
[1/1]
|
9
|
Start of feature (bp)
|
286859
|
10
|
End of feature (bp)
|
287050
|
11
|
The gene ID for the current feature
|
ENSBTAG00000016571
|
12
|
The gene name for the current feature
|
ITFG3_BOVIN
|
13
|
The transcript ID for the current feature
|
ENSBTAT00000022045
|
14
|
The transcript name for the current feature
|
ITFG3_BOVIN
|
15
|
The exon that contains the current feature and the total number of annotated exons for the gene containing the feature
|
[3/11]
|
16
|
The strand sense of the feature
|
+
|
17
|
The annotated reading frame (when contained in GTF)
|
2
|
18
|
The reading frame estimated by SNPdat
|
NA
|
19
|
The estimated number of stop codons in the estimated reading frame
|
0
|
20
|
The codon containing the SNP, position in the codon and reference base and mutation
|
C[C/G]T
|
21
|
The amino acid for the reference codon and new amino acid with mutation in place
|
[P/R]
|
22
|
Whether or not the mutation is synonymous
|
N
|
23
|
The protein ID for the current feature
|
ENSBTAP00000022045
|
24
|
The RS identifier for queries that map to known SNPs
|
rs134558771
|
25 |
Error messages, warnings etc. |
NA |