Table 1.
Genomes sequences included in the study
| Species | ID | BioProject ID |
|---|---|---|
|
F. tularensis subsp. holarctica |
FSC200 |
16087 |
|
F. tularensis subsp. holarctica |
FSC208 |
73467 |
|
F. tularensis subsp. holarctica |
RC503 |
30637 |
|
F. tularensis subsp. holarctica |
LVS |
16421 |
|
F. tularensis subsp. holarctica |
FSC539 |
73393 |
|
F. tularensis subsp. holarctica |
OR96-246 |
30669 |
|
F. tularensis subsp. holarctica |
FTA |
20197 |
|
F. tularensis subsp. holarctica |
URFT1 |
19645 |
|
F. tularensis subsp. holarctica |
MI00-1730 |
30635 |
|
F. tularensis subsp. holarctica |
OSU18 |
17265 |
|
F. tularensis subsp. holarctica |
FSC021 |
73369 |
|
F. tularensis subsp. holarctica |
FSC022 |
19015 |
|
F. tularensis subsp. mediasiatica |
FSC147 |
19571 |
|
F. tularensis subsp. mediasiatica |
FSC148 |
73379 |
|
F. tularensis subsp. tularensis |
FSC054 |
73375 |
|
F. tularensis subsp. tularensis |
ATCC6223 |
30629 |
|
F. tularensis subsp. tularensis |
FSC033 |
19017 |
|
F. tularensis subsp. tularensis |
MA00-2987 |
30443 |
|
F. tularensis subsp. tularensis |
FSC198 |
17375 |
|
F. tularensis subsp. tularensis |
SCHUS4 (FSC237) |
9 |
|
F. novicida |
FTE |
30119 |
|
F. novicida |
U112 |
16088 |
|
F. novicida |
FTG |
30447 |
|
F. novicida |
GA99-3549 |
19019 |
|
F. novicida |
FSC160 |
73385 |
|
F. novicida |
FSC159 |
73383 |
|
F. novicida |
GA99-3548 |
19573 |
|
F. hispaniensis |
FSC454 |
73391 |
|
Wolbachia persica |
FSC845 |
73171 |
|
F. noatunensis subsp. orientalis |
FSC770 |
73389 |
|
F. noatunensis subsp. orientalis |
FSC771 |
73447 |
|
F. noatunensis subsp. noatunensis |
FSC846 |
73463 |
|
F. noatunensis subsp. noatunensis |
FSC769 |
73397 |
|
F. noatunensis subsp. noatunensis |
FSC774 |
73457 |
|
F. noatunensis subsp. noatunensis |
FDC178 |
73465 |
|
F. noatunensis subsp. noatunensis |
FSC772 |
73449 |
|
F. philomiragia |
FSC154 |
73381 |
|
F. philomiragia |
FSC145 |
73377 |
|
F. philomiragia |
ATCC25015 |
32411 |
|
F. philomiragia |
FSC037 |
73371 |
|
F. philomiragia |
FSC039 |
73373 |
| F. philomiragia | ATCC25017 | 27853 |
Francisella genomes included in this study selected to represent the known diversity of Francisella: 22 strains representing the public health perspective of F. tularensis (clade 1) and 13 strains of F. noatunensis and F. philomiragia (clade 2) representing a fish farming industry and health perspective.