Skip to main content
. 2013 Feb 18;8(2):e56725. doi: 10.1371/journal.pone.0056725

Figure 2. Characterization of Homology Model of VCO395_1035.

Figure 2

A. The cartoon representation of 3D modeled structure of VCO395_1035 using PDB ID: 3STJ. Helix (blue), sheets (Purple) and loops (Sky Blue). B. The β-barrel like structure of protease Domain of VCO395_1035 showing active site loops LD: Activation loop, L1: Oxyanion loop, L2: Substrate specificity and L3: Regulatory loop along with interdomain linker (IDL) helix. ML 1: Modeled loop 1 in Protease domain (residue 79–89) on FALC-Loop server indicated as α1-helix. C. The PDZ1 Domain of VCO395_1035, showing flexible carboxylate binding loop (CBL) and interacting clamp (IC). ML 2: Modeled loop 2 in PDZ1 domain (residue 176–189) on FALC-Loop server indicated as α6-helix.