Skip to main content
. 2013 Feb 18;8(2):e56920. doi: 10.1371/journal.pone.0056920

Table 4. Protein domains and functions of 21 unannotated gene sequences differentially expressed in the microarray analysis.

Transcriptome ID Signal peptide Domain type* Domain function
A86K5 Absent cytochrome b - electron carrier activity - oxidoreductase activity
ANCWJrev Absent Peptidase_M14 - metallocarboxypeptidase activity - zinc ion binding
AQEONrev Present MFS_general_subst_transpt secondary membrane transporter
AY47U Present myosin head - motor activity - ATP binding
B11UPrev Absent fibrillar collagen extracellular matrix structural constituent
BXWCQrev Absent WAP-4-diS_core peptidase inhibitor activity
C0173 Absent Actin protein binding
C95Y3rev Present ATPase_P-typ_ion-transptr - ATP binding - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
CFFRCrev Absent MFS_general_subst_transpt secondary membrane transporter
CGC11rev Absent pyruvate kinase - magnesium ion binding - pyruvate kinase activity - potassium ion binding
CIQIV Present Chitin_bind_4 structural constituent of cuticle
CJ2P2 Present actin zf-C2H2 - protein binding - zinc ion binding
CMRY6rev Present zf-C2H2 zinc ion binding
Contig 1137rev Absent ATP-gua_Ptrans - kinase activity - transferase activity, transferring phosphorus-containing groups
Contig 1413rev Absent RNA-binding S4 Blue (type 1) copper protein - RNA binding - copper ion binding - electron carrier activity
Contig 227rev Absent zf-CCHC - nucleic acid binding - zinc ion binding
Contig 905rev Present MFS_general_subst_transpt secondary membrane transporter
CP026 Absent ATP-gua_Ptrans - kinase activity - transferase activity, transferring phosphorus-containing groups
DFP6W Absent Destabilase lysozyme activity
EBSXErev Present Ser/Thr_prot_kinase-like - protein serine/threonine kinase activity - ATP binding
EY7U2 Absent AA_TRANSFER_CLASS_2 Lipocalin like transferase activity binding

These unannotated gene sequences were found to be statistically significantly (p<0.05) and 2- or 4-fold and greater differentially expressed in the single pair-wise comparisons of albino versus light and albino versus dark groups, but not statistically significant between the light and dark groups. For ease of readability, protein domain results of the unannotated probes of each individual comparison were combined into one table.

*

Abbreviations for domain types in Table 4: ATP-gua_Ptrans  =  ATP:guanido phosphotransferase, C-terminal catalytic domain; zf-CCHC  =  Zinc finger, CCHC-type; WAP-4-diS_core  =  Whey acidic protein, 4-disulphide core; MFS_gen_subst_transpt  =  Major facilitator superfamily, general substrate transporter; Chitin_bind_4  =  Insect cuticle protein; AA_TRANSFER_CLASS_2  =  Aminotransferase, class-II, pyridoxal-phosphate binding site; Peptidase_M14  =  Peptidase M14, caboxypeptidase D unit 2; ATPase_P-typ_ion-transptr  =  ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/H-transporter; zf-C2H2  =  Zinc finger, C2H2-type; Ser/Thr_prot_kinase-like  =  Serine/threonine-protein kinase-like.