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. 2013 Feb 18;8(2):e56869. doi: 10.1371/journal.pone.0056869

Table 1. PCR primer sets.

Primers for amplification of: Sequence TA
Unmodified vector F: 5′-GGCCATTAATTTAATTAACCTTATTTTACAGATGG-3′ R: 5′-GGAAGGATCCACTAGTAGATTGGGAAAGCTGCTG-3′ 59°C, 30 s
Mut 1 vector F: 5′-GTTCCTTTTGGTCCTAGGTCATTGTAAATCAG-3′ R: 5′-CTGATTTACAATGACCTAGGACCAAAAGGAAC-3′ 60°C, 30 s
Mut 7 vector F: 5′-GGACTGGGGGTGGGGAGGGGATACAGGGTGTG-3′ R: 5′-CACACCCTGTATCCCCTCCCCACCCCCAGTCC-3′ 60°C, 30 s
Del vector F: 5′-GGGAATTCCTCTCAAGGCTGGTGGGAG-3′ R: 5′-GGGAATTCGCTCTCTAACGTGATTA-3′ 60°C. 30 s
Oxtr mRNA F: 5′-GTGCAGATGTGGAGCGTCT-3′ R: 5′-GTTGAGGCTGGCCAAGAG-3′ 60°C, 30 s
Hprt1 mRNA F: 5′-GGGATTTGAATCACGTTTGTG-3′ R: 5′-TTGCGCTCATCTTAGGCTTT-3′ 60°C, 30 s
Bisulfite treated Oxtr First PCR round 5′- TTGGTTTTTTTTGTTTTTTTTG-3′ 5′- AAAAAATATCTACCCCTCCCA-3′ 54°C, 30 s
Bisulfite treated Oxtr Second PCR round (Nested PCR) 5′- TTGGTTTTTTTTGTTTTTTTTG-3′ 5′- CCACCAACCTTAAAAAAAATCT-3′ 54°C, 30 s

TA, Temperatures and time applied for annealing.