Table II.
Proteins Used in Test Structure Calculations
| Protein (Name and Abbreviation) | Residues | Fold | NMR Data (PDB ID) | References |
|---|---|---|---|---|
| B1 domain of protein G (GB1) | 54 | αβ | 3GB1 | 29 |
| Ubiquitin (Ubi) | 76 | αβ | 1D3Z | 30 |
| DNA damage inducible protein 1 (DinI) | 81 | αβ | 1GHH | 26 |
| LM5-1 FYVE domain (LM5-1) | 84 | αβ | 1Z2Q | 31 |
| C-terminal KH domain of heterogeneous nuclear ribonucleoprotein K (KH3) | 89 | αβ | 1KHM | 25 |
| Barrier-to-autointegration factor (BAF, chain A only) | 89 | α | 2EZX | 32 |
| Cytoplasmic B domain of the mannitol transporter IImannitol (IIBMtl) | 97 | αβ | 1VKR | 28 |
| Sortease A in covalent complex with an LPXTG analog (SrtA) | 148 | β | 2KID | 27 |
| Apo dihydrofolate reductase (DHFR) | 162 | αβ | 2L28 | 33 |
| N-terminal domain of enzyme I (EIN) | 259 | αβ | 1EZA (distance, torsion angle) 3EZA (RDC) | 34, 35 |