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. 2013 Feb;20(2):124–136. doi: 10.1089/cmb.2012.0092

Table 1.

Gene Ontology Enrichments of the Subtrees in the Prize-Collecting Steiner Forest Illustrated in Figure 2

Subtree name GO enrichment—biological process Corr p-value
T1 Regulation of cell cycle 1.97 × 10−17
  Cell division 2.60 × 10−17
  Cell cycle 3.02 × 10−17
T2 Transcription 7.07 × 10−13
  Regulation of nucleobase, nucleoside, nucleotide, and nucleic  acid metabolic process 2.36 × 10−12
  Nuclear transport 7.30 × 10−8
T3 Positive regulation of gene-specific transcription 2.20 × 10−5
  Regulation of gene-specific transcription 7.75 × 10−5
  Positive regulation of transcription, dna-dependent 9.11 × 10−5
T4 Actin filament-based process 1.51 × 10−9
  Endocytosis 4.42 × 10−9
  Actin cytoskeleton organization 9.32 × 10−9
T5 Protein folding 1.60 × 10−3
  Protein refolding 1.60 × 10−3
  Kinetochore assembly 4.25 × 10−3
T6 Positive regulation of glycolysis 2.54 × 10−4
  Regulation of glycolysis 2.54 × 10−4
  Positive regulation of transcription 2.54 × 10−4