Skip to main content
. 2012 Dec 22;7:48. doi: 10.1186/1745-6150-7-48

Table 2.

Definitions of events in the second scenario design (in the DAG)

i Termini of the edge projected from <e, d> Triplets
0
 Edge is not projected (induction ends)
 None
1
 <e,х> (х is a leaf cohered with e; induction ends)
 <tr–o,e,d>, <tr–i,e,х>, <loss–,e,d>
2
 same as #1
 <gain,e,х>
3
 <e,d1>
 None
4
 <e1,d1>; <e2,d2>
 None
5
 <e2,d1>; <e1,d2>
 None
6
 <e,d1>
 <loss,e,d2>
7
 <e,d2>
 <loss,e,d1>
8
 <e,d1>
 None
9
 <e,d2>
 None
10
 <e,d1>
 None
11
 <e,d2>
 None
12
 <e1,d>; <e2,d>
 <dupl,e,d>
13
 <e1,d>; <e2,d>
 None
14
 <e1,d>; <e2,d>
 None
15
 <e1,d'>; <e2,d>
 <tr+o,e1,d>, <tr+i,e1,d'>
16
 <e2,d'>; <e1,d>
 <tr+o,e2,d>, <tr+i,e2,d'>
17
 <e1,d'>; <e2,d>
 <gain,e1,d'>
18
 <e2,d'>; <e1,d>
 <gain,e2,d'>
19
 <e,d*>
 <sleep,e,d>
20
 <e0,d'>
 <gain_big,e,d'>
21
 <e,d'1>
 <tr–o,e,d>, <tr–i,e,d'>, <loss–,e,d>
22
 <e,d'1>
 <gain,e,d'>
23
 <e1,d'1>; <e2,d'2>
 <tr–o,e,d>, <tr–i,e,d'>, <loss–,e,d>
24
 <e1,d'2>; <e2,d'1>
 <tr–o,e,d>, <tr–i,e,d'>, <loss–,e,d>
25
 <e1,d'1>; <e2,d'2>
 <gain,e,d'>
26
 <e1,d'2>; <e2,d'1>
 <gain,e,d'>
27
 <e,d'1>
 <tr–o,e,d>, <tr–i,e,d'>, <loss–,e,d>, <loss,e,d'2>
28
 <e,d'2>
 <tr–o,e,d>, <tr–i,e,d'>, <loss–,e,d>, <loss,e,d'1>
29
 <e,d'1>
 <gain,e,d'>, <loss,e,d'2>
30
 <e,d'2>
 <gain,e,d'>, <loss,e,d'1>
31
 <e1,d'>; <e2,d'>
 <tr–o,e,d>, <tr–i,e,d'>, <loss–,e,d>, <dupl,e,d'>
32
 <e1,d'>; <e2,d'>
 <gain,e,d'>, <dupl,e,d'>
33
 <e1,d'>; <e2,d">
 <tr–o,e,d>, <loss–,e,d>, <tr–i,e,d'&d">, <tr+o,e1&e2,d'&d">, <tr+i,e1&e2,d'&d">
34 <e1,d'>; <e2,d"> <gain,e, d'&d">, <tr+o,e1&e2,d'&d">, <tr+i,e1&e2,d'&d">

Consider i the ordering of events specified in Table 1; the second column specifies the termini of the edge projected from the pair <e, d>. The third column specifies triplets to be associated with edges of Rj. A notation e1&e2 designates a multiplier of 0.5. In rows 1, 21, 23, 24, 27, 28, 31, 33 the triplets <loss–,e,d> designate the loss of the donor copy of the gene after transfer.