Table 2.
Overview about experiments and measurements for all data domains stored in OPTIMAS-DW
|
Experiment |
Transcript |
Metabolic |
Ionomic |
Enzyme |
Phenomic |
|---|---|---|---|---|---|
| data | data | data | data | data | |
|
Treatment experiments | |||||
| Cold Stress (A188 and B73) |
4,010,880 |
28,769 |
1,140 |
- |
208 |
| Drought Stress |
2,005,440 |
39,082 |
- |
- |
44 |
| (study of 2 pairs of maize inbred lines, |
|
|
|
|
|
| each having one line with a good |
|
|
|
|
|
| water-use-efficiency and one line |
|
|
|
|
|
| with a poor one) |
|
|
|
|
|
| Nitrogen Stress (A188 and B73) |
2,673,920 |
14,629 |
999 |
- |
176 |
| Nitrogen Use Efficiency 1 |
- |
61,035 |
- |
- |
1,699 |
| (16 maize inbred lines) |
|
|
|
|
|
| Nitrogen Use Efficiency 4 |
- |
- |
- |
- |
2,312 |
| (C:N ratios of different plant parts) |
|
|
|
|
|
| Mycorrhiza Compartment 2/3 |
501,360 |
7,510 |
438 |
- |
108 |
| (Physiological, elemental, gene |
|
|
|
|
|
| expression and metabolite analysis |
|
|
|
|
|
| of mycorrhizal maize line B73) |
|
|
|
|
|
| Mycorrhiza Compartment 6/8 |
- |
- |
4,654 |
- |
1271 |
| (Screening of 27 maize lines for their |
|
|
|
|
|
| responsiveness towards the arbuscular |
|
|
|
|
|
| mycorrhiza fungi by physiological and |
|
|
|
|
|
| elemental analysis) |
|
|
|
|
|
| Mycorrhiza Compartment 9 |
- |
- |
5,699 |
- |
407 |
| (Analysis of 2 closely related pairs |
|
|
|
|
|
| of maize lines for their physiological, |
|
|
|
|
|
| elemental and metabolite profile in |
|
|
|
|
|
| reaction to mycorrhiza infection.) |
|
|
|
|
|
| Field Experiment 2010 |
- |
169,991 |
- |
- |
3,073 |
| (26 inbred lines grown in the field) |
|
|
|
|
|
|
13C Disc feeding (13C enrichment) |
- |
1,152 |
- |
- |
- |
|
13C Glucose feeding (13C enrichment) |
- |
286 |
- |
- |
- |
|
13CO2 feeding (13CO2 enrichment) |
- |
743 |
- |
- |
- |
|
15N Urea feeding (15N enrichment) |
- |
351 |
- |
- |
- |
|
Plant growth stage experiments | |||||
| B73 Grains |
- |
- |
207 |
- |
- |
| (Comparison of elemental composition |
|
|
|
|
|
| of maize kernels of line B73 provided |
|
|
|
|
|
| by Regensburg or BASF) |
|
|
|
|
|
| Flowering Time |
1,504,080 |
27,823 |
- |
- |
- |
| (analysis of 2 pairs of maize inbred |
|
|
|
|
|
| lines to identify transcripts/metabolites |
|
|
|
|
|
| regulating flowering time in maize) |
|
|
|
|
|
| Leaf Gradient |
1,671,200 |
16,491 |
720 |
180 |
30 |
| (analysis of the developmental |
|
|
|
|
|
| gradient of the third maize leaf) |
|
|
|
|
|
| Complete Data Warehouse | 12,366,880 | 367,862 | 13,857 | 180 | 9,328 |