Table 2.
A list of commonly up-regulated HLB responsive genes in various studies
| Probeset ID | AtGID | Arabidopsis gene annotation | GO term |
|---|---|---|---|
| Cit.10032.1.S1_x_at |
AT1G75750 |
GA-responsive GAST1 homolog; BR, GA and ABA responsive expression; located in cell wall; GASA1 (GAST1 PROTEIN HOMOLOG 1) |
Response to stimulus |
| Cit.12214.1.S1_s_at |
AT5G46590 |
NAC096 (Arabidopsis NAC domain containing protein 96); transcription factor |
Transcription |
| Cit.13437.1.S1_s_at |
AT4G39210 |
APL3 (sugar-inducible); glucose-1- phosphate adenylyltransferase |
Carbohydrate metabolic process |
| Cit.17561.1.S1_s_at |
AT5G05365 |
Metal ion binding |
Transport |
| Cit.19674.1.S1_s_at |
AT3G45140 |
LOX2 (LIPOXYGENASE 2); lipoxygenase; response to JA, bacterium, fungus and wounding; JA biosynthetic process |
Response to stimulus |
| Cit.25840.1.S1_s_at |
AT1G17840 |
WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11); ATPase, coupled to transmembrane movement of substances / fatty acid transporter; response to stress and ABA |
Transport; Response to stimulus |
| Cit.30071.1.S1_at |
AT5G02580 |
Unknown protein (auxin-ethylene interaction, gemivirus induced) |
Unknown process |
| Cit.33707.1.S1_at |
AT4G27900 |
CCT motif family protein (ethylene, gemivirus-induced) |
Unknown process |
| Cit.7635.1.S1_at |
AT3G15650 |
Phospholipase/carboxylesterase family protein |
Other metabolic process |
| Cit.5367.1.S1_at |
|
Transcript Assignment: DN622378; Human protein tyrosine phosphatase type IVA |
Unknown process |
| Cit.3534.1.S1_s_at |
|
Grape RAP2-4-like ethylene transcription factor |
Unknown process |
| Cit.29171.1.S1_at |
|
UCRPT02_65A04_b Poncirus trifoliata Roots with Iron Deficiency cDNA clone |
Unknown process |
| Cit.19313.1.S1_at |
|
Transcript Assignment: CX308038; Hypothetical protein |
Unknown process |
| Cit.11459.1.S1_s_at |
AT1G05300 |
ZIP5; cation/metal ion transmembrane transporter |
Transport |
| Cit.11460.1.S1_at |
AT1G05300 |
ZIP5; cation/metal ion transmembrane transporter |
Transport |
| Cit.12172.1.S1_at |
AT4G35160 |
O-methyltransferase family 2 protein |
Other metabolic process |
| Cit.15630.1.S1_at |
AT4G33040 |
Glutaredoxin family protein |
Oxidation-reduction process |
| Cit.17155.1.S1_at |
AT1G02850 |
BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds |
Carbohydrate metabolic process |
| Cit.17155.1.S1_s_at |
AT1G02850 |
BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds |
Carbohydrate metabolic process |
| Cit.3171.1.S1_x_at |
AT1G18880 |
Proton-dependent oligopeptide transport (POT) family protein |
Transport |
| Cit.23598.1.S1_s_at | Unknown process |
The first section contains 13 ProbeSets up-regulated in all six studies. The second section includes eight Probesets up-regulated in five studies (except Study 6, see Table 1) but their expression was higher in US-897 than in Cleopatra. AtGID, Arabidopsis gene ID.