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. 2013 Jan 16;14:27. doi: 10.1186/1471-2164-14-27

Table 2.

A list of commonly up-regulated HLB responsive genes in various studies

Probeset ID AtGID Arabidopsis gene annotation GO term
Cit.10032.1.S1_x_at
AT1G75750
GA-responsive GAST1 homolog; BR, GA and ABA responsive expression; located in cell wall; GASA1 (GAST1 PROTEIN HOMOLOG 1)
Response to stimulus
Cit.12214.1.S1_s_at
AT5G46590
NAC096 (Arabidopsis NAC domain containing protein 96); transcription factor
Transcription
Cit.13437.1.S1_s_at
AT4G39210
APL3 (sugar-inducible); glucose-1- phosphate adenylyltransferase
Carbohydrate metabolic process
Cit.17561.1.S1_s_at
AT5G05365
Metal ion binding
Transport
Cit.19674.1.S1_s_at
AT3G45140
LOX2 (LIPOXYGENASE 2); lipoxygenase; response to JA, bacterium, fungus and wounding; JA biosynthetic process
Response to stimulus
Cit.25840.1.S1_s_at
AT1G17840
WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11); ATPase, coupled to transmembrane movement of substances / fatty acid transporter; response to stress and ABA
Transport; Response to stimulus
Cit.30071.1.S1_at
AT5G02580
Unknown protein (auxin-ethylene interaction, gemivirus induced)
Unknown process
Cit.33707.1.S1_at
AT4G27900
CCT motif family protein (ethylene, gemivirus-induced)
Unknown process
Cit.7635.1.S1_at
AT3G15650
Phospholipase/carboxylesterase family protein
Other metabolic process
Cit.5367.1.S1_at
 
Transcript Assignment: DN622378; Human protein tyrosine phosphatase type IVA
Unknown process
Cit.3534.1.S1_s_at
 
Grape RAP2-4-like ethylene transcription factor
Unknown process
Cit.29171.1.S1_at
 
UCRPT02_65A04_b Poncirus trifoliata Roots with Iron Deficiency cDNA clone
Unknown process
Cit.19313.1.S1_at
 
Transcript Assignment: CX308038; Hypothetical protein
Unknown process
Cit.11459.1.S1_s_at
AT1G05300
ZIP5; cation/metal ion transmembrane transporter
Transport
Cit.11460.1.S1_at
AT1G05300
ZIP5; cation/metal ion transmembrane transporter
Transport
Cit.12172.1.S1_at
AT4G35160
O-methyltransferase family 2 protein
Other metabolic process
Cit.15630.1.S1_at
AT4G33040
Glutaredoxin family protein
Oxidation-reduction process
Cit.17155.1.S1_at
AT1G02850
BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds
Carbohydrate metabolic process
Cit.17155.1.S1_s_at
AT1G02850
BGLU11 (BETA GLUCOSIDASE 11); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds
Carbohydrate metabolic process
Cit.3171.1.S1_x_at
AT1G18880
Proton-dependent oligopeptide transport (POT) family protein
Transport
Cit.23598.1.S1_s_at     Unknown process

The first section contains 13 ProbeSets up-regulated in all six studies. The second section includes eight Probesets up-regulated in five studies (except Study 6, see Table 1) but their expression was higher in US-897 than in Cleopatra. AtGID, Arabidopsis gene ID.