Table 1. Gene nomenclature to the identified soybean major intrinsic proteins (GmMIPs) loci and their locus name, location in genome, expressed sequence tag (EST), number of trans-membranes (NTM), polypeptide length (PL), in silico root specific expression (RSE), protein subcellular predicted localization (PSL) and ka/ks ratio.
| Gene name | Locus name | Genome location | EST | NTM | PL (aa) | RSE | PSL | Ka/ks value | Comments |
| GmPIP1;1 | Glyma03g14150 | 18018230..18021565 | Yes | 6 | 285 | 15 | PLAS | <1 | |
| GmPIP1;2 | Glyma18g42630 | 51879812..51881980 | Yes | 6 | 305 | 23 | PLAS | ? | |
| GmPIP1;3 | Glyma01g42950 | 54066066..54068057 | Yes | 6 | 287 | 51 | PLAS | <1 | |
| GmPIP1;4 | Glyma11g02530 | 1656129..1658174 | Yes | 6 | 287 | 63 | PLAS | <1 | |
| GmPIP1;5 | Glyma05g37730 | 41267148..41268807 | Yes | 6 | 288 | 296 | PLAS | <1 | |
| GmPIP1;6 | Glyma08g01860 | 1202356..1204135 | Yes | 6 | 290 | 82 | PLAS | <1 | |
| GmPIP1;7 | Glyma14g06680 | 4894197..4896207 | Yes | 6 | 290 | 1635 | PLAS | <1 | |
| GmPIP1;8 | Glyma11g35030 | 36767510..36769078 | Yes | 6 | 290 | 1169 | PLAS | <1 | |
| GmPIP2;1 | Glyma04g00450 | 227991..229365 | Yes | 6 | 276 | 96 | PLAS | <1 | |
| GmPIP2;2 | Glyma06g00550 | 264336..265850 | Yes | 6 | 279 | 16 | PLAS | <1 | |
| GmPIP2;3 | Glyma11g20600 | 17405538..17407774 | Yes | 6 | 287 | 300 | PLAS | <1 | |
| GmPIP2;4 | Glyma12g08040 | 5736134..5738571 | Yes | 6 | 287 | 531 | PLAS | <1 | |
| GmPIP2;5 | Glyma12g29510 | 32929324..32931027 | Yes | 6 | 288 | 324 | PLAS | <1 | |
| GmPIP2;6 | Glyma13g40100 | 40664607..40666361 | Yes | 6 | 288 | 1008 | PLAS | <1 | |
| GmPIP2;7 | Glyma03g33800 | 41279731..41281496 | Yes | 6 | 287 | 1 | PLAS | <1 | |
| GmPIP2;8 | Glyma19g36530 | 43803906..43806142 | Yes | 6 | 286 | 1 | PLAS | <1 | |
| GmPIP2;9 | Glyma02g08110 | 6345032..6348612 | Yes | 6 | 286 | 5 | PLAS | <1 | |
| GmPIP2;10 | Glyma16g27130 | 31144909..31148555 | Yes | 6 | 286 | 39 | PLAS | <1 | |
| GmPIP2;11 | Glyma16g27140 | 31154978..31156159 | Yes | 6 | 286 | 62 | PLAS | <1 | |
| GmPIP2;12 | Glyma02g08120 | 6358474..6361413 | Yes | 6 | 286 | 1 | PLAS | <1 | |
| GmPIP2;13 | Glyma10g35520 | 43763682..43766888 | Yes | 6 | 297 | 159 | PLAS | <1 | |
| GmPIP2;14 | Glyma20g32000 | 40621201..40624089 | Yes | 6 | 285 | 106 | PLAS | <1 | |
| PseudoPIP#1 | Glyma01g27970 | 37458238..37460664 | ? | 5 | 254 | 0 | <1 | Not full length | |
| PseudoPIP#2 | Glyma02g42220 | 47295297..47297674 | Yes | 5 | 317 | 1082 | 1 | 2nd NPA missing, Not full length | |
| PseudoPIP#3 | Glyma14g24430 | 29321210..29322268 | ? | 4 | 188 | 0 | >1 | NPA modified | |
| PseudoPIP#4 | Glyma18g03330 | 2228741..2229353 | Yes | 3 | 128 | 2 | ? | 1st NPA missing, Not full length | |
| GmTIP1;1 | Glyma02g10520 | 8409966..8411440 | Yes | 6 | 253 | 0 | CYTO | <1 | |
| GmTIP1;2 | Glyma18g52360 | 60989768..60991401 | ? | 6 | 253 | 0 | CYTO | <1 | |
| GmTIP1;3 | Glyma10g43680 | 50271428..50272965 | ? | 7 | 253 | 0 | PLAS | <1 | |
| GmTIP1;4 | Glyma11g15200 | 10892421..10894109 | Yes | 6 | 253 | 17 | PLAS | <1 | |
| GmTIP1;5 | Glyma12g07120 | 4870480..4871652 | ? | 6 | 246 | 0 | PLAS | <1 | |
| GmTIP1;6 | Glyma13g40820 | 41270585..41271998 | Yes | 7 | 253 | 24 | VACU | <1 | |
| GmTIP1;7 | Glyma03g34310 | 41779243..41780564 | Yes | 6 | 251 | 2244 | CYTO | <1 | |
| GmTIP1;8 | Glyma19g37000 | 44258426..44259853 | Yes | 6 | 251 | 1181 | CYTO | <1 | |
| GmTIP1;9 | Glyma13g20940 | 24436182..24438466 | Yes | 6 | 251 | 21 | ER | <1 | |
| GmTIP2;1 | Glyma01g41670 | 53110677..53113455 | Yes | 6 | 250 | 693 | PLAS | <1 | |
| GmTIP2;2 | Glyma11g03690 | 2476012..2478825 | Yes | 6 | 250 | 903 | PLAS | <1 | |
| GmTIP2;3 | Glyma07g02060 | 1435523..1437651 | Yes | 6 | 249 | 14 | VACU | <1 | |
| GmTIP2;4 | Glyma08g21730 | 16535219..16537122 | Yes | 6 | 249 | 15 | VACU | <1 | |
| GmTIP2;5 | Glyma13g43250 | 43018922..43020336 | Yes | 6 | 248 | 1 | PLAS | <1 | |
| GmTIP2;6 | Glyma15g02090 | 1393557..1395809 | Yes | 6 | 248 | 0 | CYTO | <1 | |
| GmTIP2;7 | Glyma19g04450 | 4625496..4626575 | ? | 6 | 238 | 0 | PLAS | <1 | |
| GmTIP3;1 | Glyma09g28930 | 35913523..35915582 | Yes | 6 | 256 | 0 | CYTO | <1 | |
| GmTIP3;2 | Glyma16g33530 | 36421819..36424304 | Yes | 6 | 256 | 0 | MITO | <1 | |
| GmTIP3;3 | Glyma10g31750 | 40238530..40240337 | Yes | 6 | 255 | 0 | CYTO | <1 | |
| GmTIP3;4 | Glyma20g35860 | 44068541..44070258 | ? | 6 | 255 | 0 | CYTO | <1 | |
| GmTIP4;1 | Glyma04g08830 | 6943153..6944783 | Yes | 6 | 247 | 357 | VACU | <1 | |
| GmTIP4;2 | Glyma06g08910 | 6498818..6500103 | Yes | 6 | 247 | 89 | CYTO | <1 | |
| GmTIP5;1 | Glyma09g35860 | 41742635..41743884 | ? | 6 | 248 | 0 | CHLO | <1 | |
| PseudoTIP#1 | Glyma15g04630 | 3223182..3223750 | ? | 5 | 153 | 0 | 2nd NPA missing | ||
| PseudoTIP#2 | Glyma10g06750 | 5471639..5473323 | ? | 5 | 189 | 0 | 2nd NPA missing | ||
| PseudoTIP#3 | Glyma12g01490 | 895186..897034 | ? | 5 | 188 | 0 | <1 | Not full length | |
| GmNIP1;1 | Glyma05g29510 | 35105884..35108185 | Yes | 6 | 271 | 2 | VACU | ||
| GmNIP1;2 | Glyma08g12660 | 9268559..9270946 | Yes | 6 | 275 | 1 | PLAS | ||
| GmNIP1;3 | Glyma13g29690 | 32551102..32553703 | Yes | 6 | 274 | 0 | PLAS | <1 | |
| GmNIP1;4 | Glyma15g09370 | 6704209..6706791 | Yes | 6 | 268 | 0 | PLAS | <1 | |
| GmNIP1;5Nod26 | Glyma08g12650 | 9262302..9265834 | Yes | 6 | 272 | 0 | PLAS | ||
| GmNIP2;1 | Glyma09g37280 | 42824943..42829709 | Yes | 6 | 294 | 279 | PLAS | ||
| GmNIP2;2 | Glyma18g49410 | 58816436..58821548 | Yes | 6 | 296 | 124 | EXTR | ||
| GmNIP4;1 | Glyma07g34150 | 39062920..39065820 | ? | 6 | 269 | 0 | VACU | <1 | |
| GmNIP5;1 | Glyma10g36560 | 44670892..44676555 | Yes | 6 | 291 | 38 | PLAS | ||
| GmNIP6;1 | Glyma08g23230 | 17701761..17706495 | Yes | 6 | 307 | 1 | PLAS | <1 | |
| GmNIP6;2 | Glyma15g00620 | 355676..359967 | Yes | 6 | 305 | 15 | PLAS | <1 | |
| GmNIP7;1 | Glyma02g15870 | 14348789..14351092 | ? | 6 | 294 | 0 | PLAS | ? | |
| GmNIP7;2 | Glyma10g03870 | 2898450..2900795 | ? | 6 | 277 | 0 | PLAS | ||
| PseudoNIP#1 | Glyma02g41400 | 46541265..46543675 | ? | 7 | 216 | 0 | <1 | Not full length | |
| PseudoNIP#2 | Glyma05g29500 | 35100591..35104790 | Yes | 5 | 244 | 0 | TM5 missing, but rest similar to GmNIP1;1 | ||
| PseudoNIP#3 | Glyma07g02760 | 1873672..1881683 | ? | 5 | 182 | 0 | Not full length | ||
| PseudoNIP#4 | Glyma07g02800 | 1909545..1912431 | Yes | 4 | 185 | 0 | Not full length | ||
| PseudoNIP#5 | Glyma07g03030 | 2087864..2090380 | ? | 4 | 249 | 0 | Not full length | ||
| PseudoNIP#6 | Glyma13g01800 | 1483837..1490592 | ? | 5 | 227 | 0 | 1st NPA missing, Not full length | ||
| PseudoNIP#7 | Glyma14g07560 | 5711153..5714115 | ? | 7 | 217 | 0 | <1 | Not full length | |
| PseudoNIP#8 | Glyma14g35030 | 43721841..43723560 | ? | 7 | 220 | 0 | Not full length | ||
| PseudoNIP#9 | Glyma20g01750 | 1269856..1275738 | ? | 6 | 239 | 0 | 1st NPA missing, Not full length | ||
| PseudoNIP#10 | Glyma20g31040 | 39698455..39705450 | ? | 5 | 264 | 42 | Not full length | ||
| PseudoNIP#11 | Glyma08g29500 | 23981039..23981867 | ? | 2 | 92 | 0 | 2nd NPA missing, Not full length | ||
| PseudoNIP#12 | Glyma14g13260 | 12544663..12544842 | ? | 2 | 60 | 0 | 1st NPA missing | ||
| GmSIP1;1 | Glyma02g07680 | 6061309..6065568 | Yes | 6 | 248 | 1 | VACU | <1 | |
| GmSIP1;2 | Glyma16g26720 | 30813218..30817735 | ? | 6 | 246 | 1 | VACU | <1 | |
| GmSIP1;3 | Glyma19g28430 | 35912781..35923174 | Yes | 6 | 249 | 27 | PLAS | <1 | |
| GmSIP1;4 | Glyma16g04800 | 4096288..4102424 | Yes | 6 | 249 | 23 | PLAS | ||
| GmSIP1;5 | Glyma12g10430 | 8369034..8369846 | Yes | 6 | 240 | 0 | PLAS | <1 | |
| GmSIP1;6 | Glyma06g46340 | 48987251..48988278 | Yes | 6 | 240 | 1 | PLAS | ||
| PseudoSIP#1 | Glyma01g04520 | 4099619..4100401 | ? | 2 | 141 | 0 | >1 | 2nd NPA missing, Not full length | |
| PseudoSIP#2 | Glyma03g27340 | 35075328..35078322 | Yes | 5 | 231 | 5 | <1 | Not full length | |
| PseudoSIP#3 | Glyma19g30320 | 37949307..37951724 | Yes | 5 | 237 | 10 | <1 | Not full length | |
| GmXIP1;1 | Glyma11g10360 | 7439903..7440754 | ? | 6 | 271 | 0 | EXTR | <1 | |
| GmXIP1;2 | Glyma12g02640 | 1729006..1730580 | Yes | 6 | 313 | 0 | CYTO | ||
| PseudoXIP#1 | Glyma11g10350 | 7436965..7438428 | ? | 5 | 202 | 23 | Not full length |
Where, ka and ks are numbers of nonsynonymous and synonymous substitutions per site, respectively. PLAS: plasma membrane. VACU: vacuolar membrane, CYTO: cytosol, ER: endoplasmic reticulum, MITO: mitochondrion, CHLO: chloroplast and EXTRA: extra-cellular.