Table 6. Genome-wide promoter prediction performance comparison of different promoterprediction programs with maximum allowable distance of 500 bp from annotated TSS.

Methods	Precision	Recall	F-measure
FirstEF	0.42	0.41	0.41
Eponine	0.69	0.29	0.40
EP3	0.64	0.39	0.48
ProSOM	0.57	0.40	0.47
Proposed Method	0.68	0.59	0.63