Table 1. Spearman rank correlations (RT qPCR data vs. metabolite data)a, in the expanded patient cohort, of genes identified by microarray screening.
6-TGN | meTIMP | Ratio meTIMP/6-TGN | |||||||
Gene | Rs | P | Arrayb | Rs | P | Arrayb | Rs | P | Arrayb |
CD1D | 0.27 | 0.05 | −0.26 | 0.06 | N | −0.33 | 0.02 | N | |
CTSS | 0.16 | 0.26 | −0.39 | 0.003 | −0.38 | 0.004 | N | ||
DEF8 | 0.32 | 0.02 | P | −0.17 | 0.24 | −0.27 | 0.05 | ||
FAM156A | 0.18 | 0.18 | −0.33 | 0.01 | N | −0.34 | 0.01 | N | |
GNB4 | 0.17 | 0.22 | −0.33 | 0.01 | N | −0.37 | 0.006 | N | |
HVCN1 | 0.32 | 0.02 | P | −0.09 | 0.51 | −0.20 | 0.16 | N | |
LAP3 | 0.24 | 0.08 | −0.22 | 0.10 | −0.28 | 0.04 | N | ||
PLCB2 | 0.19 | 0.17 | P | −0.37 | 0.006 | −0.37 | 0.006 | N | |
TUSC2 | 0.41 | 0.002 | −0.16 | 0.24 | N | −0.31 | 0.02 | N |
Genes that showed a significant correlation (P<0.05) between relative gene expression levels (RT qPCR data) and the concentration of 6-TGN, meTIMP or the meTIMP/6-TGN concentration ratio in the expanded patient cohort (n = 54).
Significant (P<0.001) positive (P) or negative (N) correlations observed in the microarray data of the explorative patient cohort (n = 21) are indicated.