Table 4. Relative gene expression levels (RT qPCR data) of purine/thiopurine related genes vs. metabolite profiles.a .
All (n = 54) | R20 (n = 19) | Median (n = 17) | R4 (n = 18) | R20 vs. Median | R20 vs. R4 | R4 vs. Median | |||||
Gene | Median | Range | Median | Range | Median | Range | Median | Range | P | P | P |
ENTPD1 | 1.70 | 1.00–4.85 | 1.61 | 1.00–4.85 | 1.83 | 1.15–3.61 | 1.77 | 1.18–4.25 | 0.57 | 0.26 | 0.52 |
HPRT1 | 1.42 | 1.00–1.97 | 1.46 | 1.00–1.93 | 1.36 | 1.09–1.97 | 1.42 | 1.25–1.64 | 0.15 | 0.31 | 0.59 |
IMPDH2 | 1.86 | 1.00–2.95 | 1.92 | 1.47–2.95 | 1.89 | 1.12–2.25 | 1.75 | 1.00–2.19 | 0.57 | 0.05 | 0.22 |
MGST2 | 1.86 | 1.00–4.90 | 1.66 | 1.06–4.08 | 2.11 | 1.00–3.06 | 2.17 | 1.59–4.90 | 0.04 | 0.01 | 0.46 |
NME6 | 1.58 | 1.00–2.35 | 1.38 | 1. 5–2.05 | 1.71 | 1.00–2.35 | 1.62 | 1.19–2.19 | 0.06 | 0.03 | 0.73 |
NT5E | 9.25 | 1.00–32.14 | 11.28 | 2.12–32.14 | 8.88 | 2.30–18.74 | 6.93 | 1.00–26.94 | 0.17 | 0.05 | 0.24 |
RAC1 | 1.80 | 1.00–2.66 | 1.60 | 1.01–2.44 | 1.85 | 1.00–2.54 | 1.97 | 1.28–2.66 | 0.26 | 0.05 | 0.42 |
SLC29A2 | 2.22 | 1.00–3.68 | 2.37 | 1.42–3.39 | 2.16 | 1.14–3.68 | 1.97 | 1.00–3.43 | 0.29 | 0.10 | 0.55 |
TPMT | 1.53 | 1.00–2.72 | 1.41 | 1.00–2.49 | 1.52 | 1.10–2.64 | 1.78 | 1.30–2.72 | 0.53 | 0.02 | 0.23 |
Reverse transcription qPCR data, in the expanded patient cohort (n = 54), of genes showing significant results either in a Spearman rank order correlation analysis or in a Mann-Whitney U-test. Significant group differences are indicated in bold. Abbreviations: R20; meTIMP/6-TGN concentration ratio >20, Median; median metabolizer, R4; meTIMP/6-TGN concentration ratio ≤5.7.