TABLE E3.
Association results of 27 SNPs in TNIP1 on chromosome 5
| No. | SNP | BP | Location | MAF | OR (95% CI) | P value* | ||
|---|---|---|---|---|---|---|---|---|
| SARP/CSGA/CAG | TENOR6 | GABRIEL3 | ||||||
| 1 | rs2277940 | 150389670 | Flanking_3 | C (0.072) | ||||
| 2 | rs3763009 | 150392333 | Intron | T (0.348) | ||||
| 3 | rs9324672 | 150400249 | Intron | A (0.124) | ||||
| 4 | rs2233299 | 150405660 | Coding | T (0.262) | 0.79 (0.68-0.92) | 2.67E-03 | .49 | .35 |
| 5 | rs11747787 | 150407061 | Intron | A (0.462) | ||||
| 6 | rs4292439 | 150408388 | Intron | C (0.184) | 1.22 (1.03-1.44) | .021 | .51 | .37 |
| 7 | rs2233297 | 150409433 | Intron | G (0.065) | 1.38 (1.07-1.78) | .016 | .23 | .78 |
| 8 | rs7713223 | 150410889 | Intron | C (0.135) | ||||
| 9 | rs7713567 | 150411148 | Intron | T (0.345) | 0.80 (0.70-0.92) | 1.93E-03 | .52 | .016 |
| 10 | rs888989 | 150411223 | Intron | C (0.199) | ||||
| 11 | rs2112635 | 150412346 | Intron | C (0.333) | 0.77 (0.67-0.89) | 4.25E-04 | .32 | .43 |
| 12 | rs871269 | 150412581 | Intron | T (0.318) | ||||
| 13 | rs17111695 | 150412639 | Intron | C (0.170) | ||||
| 14 | rs12516176 | 150415838 | Intron | C (0.268) | ||||
| 15 | rs1422673 | 150419181 | Intron | T (0.198) | 0.63 (0.53-0.75) | 3.44E-07 | .18 | .018 |
| 16 | rs2233287 | 150420290 | Intron | T (0.101) | 0.62 (0.49-0.79) | 9.96E-05 | .15 | .035 |
| 17 | rs17728260 | 150423198 | Intron | G (0.082) | ||||
| 18 | rs1422674 | 150425802 | Intron | G (0.089) | 0.78 (0.61-0.99) | .042 | .65 | .77 |
| 19 | rs3792789 | 150426161 | Intron | C (0.395) | ||||
| 20 | rs4958881 | 150430429 | Intron | C (0.135) | 0.67 (0.54-0.82) | 1.58E-04 | .38 | .11 |
| 21 | rs3792785 | 150431843 | Intron | G (0.116) | 0.64 (0.51-0.79) | 7.07E-05 | .27 | .095 |
| 22 | rs3792783 | 150435925 | Intron | C (0.171) | 0.69 (0.57-0.82) | 6.11E-05 | .69 | .13 |
| 23 | rs10036748 | 150438339 | Intron | T (0.260) | 0.68 (0.58-0.79) | 1.41E-06 | .41 | .11 |
| 24 | rs918498 | 150439981 | Intron | T (0.117) | 0.77 (0.63-0.96) | .020 | .97 | .68 |
| 25 | rs13168551 | 150442831 | Flanking_5 | C (0.424) | 0.79 (0.69-0.90) | 5.51E-04 | .37 | .12 |
| 26 | rs3792780 | 150446386 | Flanking_5 | G (0.386) | ||||
| 27 | rs3762999 | 150449619 | Flanking_5 | A (0.443) | ||||
Only entries with P values of less than .05 in SARP/CSGA/CAG are shown.
BP, Base pair position based on hg18; MAF, minor allele frequency.
*
Genomic control–adjusted P value for SARP/CSGA/CAG, TENOR, and GABRIEL.