TABLE E4.
Prediction of asthma susceptibility using 6 SNPs in GSDMB, IL33, IL1RL1, TSLP, IL13, and HLA-DRA
SNP | Gene | SARP/CSGA/CAG | TENOR | AUC | |||
---|---|---|---|---|---|---|---|
|
|
||||||
P value | Deviance (%)* | AUC | P value | Deviance (%) | |||
rs2872507 | GSDMB | .0063 | 0.25% | .11 | 0.12% | ||
| |||||||
rs3939286 | IL33 | .033 | 0.15% | .061 | 0.17% | ||
| |||||||
rs13431828 | IL1RL1 | 2.43E-04 | 0.46% | .03 | 0.23% | ||
| |||||||
rs1837253 | TSLP | 4.78E-04 | 0.41% | .13 | 0.11% | ||
| |||||||
rs20541 | IL13 | .22 | 0.05% | .0016 | 0.47% | ||
| |||||||
rs2395185 | HLA-DRA | 3.84E-04 | 0.42% | 6.47E-05 | 0.78% | ||
| |||||||
All 6 SNPs† | 1.12E-09 | 1.76% | 0.59 | 8.97E-07 | 1.85% | 0.592 | |
| |||||||
Genetic Score‡ | 1.31E-11 | 1.56% | 0.581 | 7.65E-09 | 1.60% | 0.582 |
AUC, Area under the receiver operating characteristic curve.
Percentage of deviance explained by SNPs in logistic regression model adjusted for age and sex.
All 6 SNPs were included in the logistic regression model.
A single score determined by counting the number of risk SNPs of 6 SNPs.