. 2012 Nov 4;126(3):583–600. doi: 10.1007/s00122-012-2003-7

Table 5.

Genetic characteristics of QTLs for GY and ASI mapped across well-watered (WW), water stress (WS) and combined all six environments (ALL) on F_2:3 population CML444 × CML441

Trait	Env^a	Chr	Pos (cM)	Marker interval	Physical position^b	LOD		R ²	\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ R^{2}_{\text{QEI}} $$\end{document}	Additive effects^c						Direction
Trait	Env^a	Chr	Pos (cM)	Marker interval	Physical position^b	G	QEI	R ²		MWW	ZWW	MWS10	MWS11	KWS	ZWS	Direction
GY	WW	2	34.0	phm4586.12–pza01280.2	30.11–149.43	2.68	1.28	5.31	1.21	0.32^A	0.18^D	–	–	–	–	CML444
	WW	3	231.0	pza00279.2–pza02616.1	52.80–210.16	11.19	2.38	24.57	11.48	0.85^PD	0.10^D	–	–	–	–	CML444
	WS	3	143.0	pza02098.2–pza03070.9	11.89–43.86	2.77	1.47	9.85	4.30	–	–	0.11^OD	0.15^OD	0.09^OD	0.07^OD	CML444
	ALL	–	–	–	–	–	–	–	–	–	–	–	–	–	–	–
ASI	WW	1	200.0	phm3034.3–pza01921.19	255.55–261.32	2.60	1.62	14.11	2.68	0.11^PD	0.11^OD	–	–	–	–	CML441
		2	125.0	pza01991.3–pza02727.1	220.40–227.92	3.86	0.57	16.65	4.66	–	–	0.13^OD	0.11^OD	0.51^OD	0.46^D	CML444
		3	140.0	pza02098.2–pza03070.9	11.89–43.86	2.57	0.52	9.55	1.98	–	–	0.07^OD	0.18^OD	0.32^D	0.46^D	CML441
	WS	6	133.0	phm12794.47–phm1190.3	120.23–128.48	4.37	2.11	14.77	4.70	–	–	0.13^D	0.36 ^D	0.43^PD	0.64^D	CML444
	WS	7	80.0	pza01909.2–pza01210.1	6.44–75.10	2.81	0.28	5.93	2.05	–	–	0.09^PD	0.18^A	0.44^A	0.48^A	CML441
	ALL	3	140.0	pza00508.2–pza03070.9	11.89–43.87	3.18	1.18	9.89	4.11	0.09^OD	0.03^OD	0.07^OD	0.14^OD	0.29^OD	0.46^D	CML441
	ALL	7	82.0	pza01909.2–pza01210.1	6.44–75.10	3.70	1.36	7.56	4.65	0.16^PD	0.06^D	0.09^D	0.17^A	0.54^A	0.48^A	CML441

–, there are no stable QTLs for a give trait across environments

^aJoint analysis across WW: well-watered environments (MWW and ZWW), WS: water stress environments (MWS10, MWS11, KWS and ZWS) and combined across all six environments

^bPhysical positions of the flanking markers on chromosomes in Mb (10⁶ pb). LOD_G, LOD score for genetic effects across environments; LOD_QEI, LOD score of the QTL × environment interaction; R ², percentage of phenotype variance explained by the QTL across environments; \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ R^{2}_{\text{GEI}} $$\end{document} phenotype variation explained by main effects QTL × environment interaction across environments

^cThe genetic action of the QTLs in each environment determined on the basis of the level of dominance: additive (A), partial dominance (PD), dominance (D) and overdominance (OD)