Table 2.
Speciation of clinical and environmental Fusarium isolates collected in a Brazilain hospital
| Species ID (EF-1α Identity match%) | Isolate number | Collection date | Sample type | Isolate source |
|---|---|---|---|---|
| FSSC† (99.3) |
B8586 |
12/10/2005 |
Clinical |
HP01, blood |
| FSSC† (100) |
B8659 |
10/16/2007 |
Clinical |
DP33, skin scraping |
| FSSC† (99.1) |
B8684 |
7/13/2009 |
Clinical |
DP58, nail scraping |
| FSSC† (99.6) |
B8685 |
7/31/2009 |
Clinical |
DP60, skin scraping |
| FSSC 1-a |
B8648 |
7/16/2007 |
Clinical |
DP26, nail scraping |
| FSSC 1-a |
B8593 |
7/19/2006 |
Clinical |
HP03, lesion swab |
| FSSC 1-a |
B8710 |
7/31/2007 |
Environmental |
BR06, shower swab |
| FSSC 1-a |
B8711 |
7/31/2007 |
Environmental |
BR06, shower swab |
| FSSC 1-a |
B8712 |
7/31/2007 |
Environmental |
BR06, wall swab |
| FSSC 1-a |
B8714 |
7/31/2007 |
Environmental |
BR06, wall swab |
| FSSC 1-a |
B8715 |
7/31/2007 |
Environmental |
BR06, wall swab |
| FSSC 1-a |
B8716 |
7/31/2007 |
Environmental |
BR06, wall swab |
| FSSC 1-a |
B8720 |
8/14/2007 |
Environmental |
BR07, shower swab |
| FSSC 1-a |
B8721 |
8/14/2007 |
Environmental |
BR07, shower swab |
| FSSC 1-a |
B8690 |
9/21/2006 |
Environmental |
BR10, wall swab |
| FSSC 1-a |
B8694 |
10/5/2006 |
Environmental |
BR11, floor swab |
| FSSC 1-a |
B8741 |
10/25/2007 |
Environmental |
BR12, shower swab |
| FSSC 1-a |
B8696 |
11/1/2006 |
Environmental |
BR03, air |
| FSSC 1-b |
B8589 |
4/17/2006 |
Clinical |
HP02, blood |
| FSSC 1-b |
B8590 |
4/17/2006 |
Clinical |
HP02, blood |
| FSSC 1-b |
B8591 |
4/20/2006 |
Clinical |
HP02, skin biopsy |
| FSSC 1-b |
B8700 |
11/1/2006 |
Environmental |
BR03, floor swab |
| FSSC 1-b |
B8717 |
7/31/2007 |
Environmental |
BR06, wall swab |
| FSSC 1-b |
B8728 |
8/31/2007 |
Environmental |
BR03, sink swab |
| FSSC 1-b |
B8744 |
10/26/2007 |
Environmental |
BR01, water |
| FSSC 1-b |
B8745 |
10/26/2007 |
Environmental |
BR01, water |
| FSSC 1-b |
B8662 |
10/31/2007 |
Clinical |
DP36, nail scraping |
| FSSC 1-b |
B8681 |
5/20/2009 |
Clinical |
DP55, skin scraping |
| FSSC 1-b |
B8757 |
7/6/2009 |
Environmental |
BR03, shower swab |
| FSSC 1-b |
B8760 |
7/6/2009 |
Environmental |
BR03, air |
| FSSC 1-b |
B8637 |
7/28/2009 |
Clinical |
HP17, biopsy |
| FSSC 1-b |
B8638 |
9/4/2009 |
Clinical |
HP18, blood |
| FSSC 1-b |
B8639 |
9/4/2009 |
Clinical |
HP18, blood |
| FSSC 1-b |
B8640 |
9/4/2009 |
Clinical |
HP18, blood |
| FSSC 2-d |
B8592 |
7/12/2006 |
Clinical |
HP03, blood |
| FSSC 2-d |
B8697 |
11/1/2006 |
Environmental |
BR03, air |
| FSSC 2-d |
B8601 |
4/10/2007 |
Clinical |
HP07, skin biopsy |
| FSSC 2-d |
B8602 |
4/10/2007 |
Clinical |
HP07, vesicle |
| FSSC 2-d |
B8643 |
6/14/2007 |
Clinical |
DP21, nail scraping |
| FSSC 2-d |
B8603 |
6/18/2007 |
Clinical |
HP08, blood |
| FSSC 2-d |
B8604 |
6/18/2007 |
Clinical |
HP08, blood |
| FSSC 2-d |
B8605 |
6/18/2007 |
Clinical |
HP08, blood |
| FSSC 2-d |
B8606 |
6/18/2007 |
Clinical |
HP08, skin biopsy |
| FSSC 2-d |
B8607 |
6/19/2007 |
Clinical |
HP08, skin swab |
| FSSC 2-d |
B8608 |
6/21/2007 |
Clinical |
HP08, sputum |
| FSSC 2-d |
B8609 |
7/4/2007 |
Clinical |
HP09, skin biopsy |
| FSSC 2-d |
B8683 |
7/10/2009 |
Clinical |
DP57, skin scraping |
| FSSC 2-d |
B8610 |
7/17/2007 |
Clinical |
HP09, blood |
| FSSC 2-d |
B8611 |
7/17/2007 |
Clinical |
HP09, blood |
| FSSC 2-d |
B8612 |
7/17/2007 |
Clinical |
HP09, blood |
| FSSC 2-d |
B8613 |
7/4/2007 |
Clinical |
HP09, skin swab |
| FSSC 2-d |
B8616 |
7/26/2007 |
Clinical |
HP10, skin scraping |
| FSSC 2-d |
B8617 |
7/26/2007 |
Clinical |
HP10, skin scraping |
| FSSC 2-d |
B8625 |
8/2/2007 |
Clinical |
HP11, nail scraping |
| FSSC 2-d |
B8626 |
8/7/2007 |
Clinical |
HP11, lesion swab |
| FSSC 2-d |
B8649 |
8/10/2007 |
Clinical |
DP22, nail scraping |
| FSSC 2-d |
B8650 |
8/17/2007 |
Clinical |
DP27, skin scraping |
| FSSC 2-d |
B8655 |
9/21/2007 |
Clinical |
DP32, skin scraping |
| FSSC 2-d |
B8661 |
10/31/2007 |
Clinical |
DP35, skin scraping |
| FSSC 2-d |
B8749 |
10/31/2007 |
Environmental |
BR07, water |
| FSSC 2-d |
B8750 |
10/31/2007 |
Environmental |
BR07, water |
| FSSC 2-d |
B8663 |
1/11/2008 |
Clinical |
DP37, nail scraping |
| FSSC 2-d |
B8668 |
4/8/2008 |
Clinical |
DP42, nail scraping |
| FSSC 2-d |
B8669 |
4/24/2008 |
Clinical |
DP43, skin scraping |
| FSSC 2-d |
B8673 |
9/26/2008 |
Clinical |
DP47, nail scraping |
| FSSC 2-d |
B8675 |
10/16/2008 |
Clinical |
DP49, nail scraping |
| FSSC 2-d |
B8631 |
12/1/2008 |
Clinical |
HP14, lesion aspirate |
| FSSC 2-d |
B8632 |
12/2/2008 |
Clinical |
HP14, skin biopsy |
| FSSC 2-d |
B8679 |
2/20/2009 |
Clinical |
DP53, nail scraping |
| FSSC 2-f |
B8587 |
12/14/2005 |
Clinical |
HP01, blood |
| FSSC 2-f |
B8588 |
12/14/2005 |
Clinical |
HP01, blood |
| FSSC 2-f |
B8692 |
9/21/2006 |
Environmental |
BR10, floor swab |
| FSSC 2-f |
B8596 |
12/26/2006 |
Clinical |
HP04, lesion ulcer |
| FSSC 2-f |
B8597 |
2/4/2007 |
Clinical |
HP05, blood |
| FSSC 2-f |
B8598 |
2/4/2007 |
Clinical |
HP05, blood |
| FSSC 2-f |
B8599 |
2/5/2007 |
Clinical |
HP05, skin biopsy |
| FSSC 2-f |
B8600 |
3/12/2007 |
Clinical |
HP06, nail scraping |
| FSSC 2-f |
B8644 |
6/18/2007 |
Clinical |
DP22, nail scraping |
| FSSC 2-f |
B8645 |
6/18/2007 |
Clinical |
DP23, skin scraping |
| FSSC 2-f |
B8615 |
7/26/2007 |
Clinical |
HP10, skin swab |
| FSSC 2-f |
B8651 |
9/6/2007 |
Clinical |
DP28, nail scraping |
| FSSC 2-f |
B8657 |
10/4/2007 |
Clinical |
DP28, nail scraping |
| FSSC 2-f |
B8666 |
3/7/2008 |
Clinical |
DP40, nail scraping |
| FSSC 2-f |
B8671 |
5/14/2008 |
Clinical |
DP45, nail scraping |
| FSSC 2-h |
B8665 |
1/22/2008 |
Clinical |
DP39, nail scraping |
| FSSC 2-i |
B8646 |
6/26/2007 |
Clinical |
DP24, nail scraping |
| FSSC 2-i |
B8653 |
9/21/2007 |
Clinical |
DP30, nail scraping |
| FSSC 2-i |
B8670 |
4/28/2008 |
Clinical |
DP44, nail scraping |
| FSSC 2-i |
B8678 |
1/26/2009 |
Clinical |
DP52, nail scraping |
| FSSC 2-i |
B8688 |
10/6/2009 |
Clinical |
DP63, nail scraping |
| FSSC 2-i |
B8687 |
10/8/2009 |
Clinical |
DP62, skin scraping |
| FSSC 2-k |
B8642 |
6/5/2007 |
Clinical |
DP20, skin scraping |
| FSSC 2-k |
B8647 |
7/2/2007 |
Clinical |
DP25, nail scraping |
| FSSC 2-k |
B8614 |
7/26/2007 |
Clinical |
HP10, skin swab |
| FSSC 2-k |
B8618 |
9/5/2007 |
Clinical |
HP10, sinovial fluid |
| FSSC 2-k |
B8619 |
9/5/2007 |
Clinical |
HP10, sinovial fluid |
| FSSC 2-k |
B8620 |
9/10/2007 |
Clinical |
HP10, sinovial fluid |
| FSSC 2-k |
B8621 |
9/10/2007 |
Clinical |
HP10, sinovial fluid |
| FSSC 2-k |
B8654 |
9/21/2007 |
Clinical |
DP31, skin scraping |
| FSSC 2-k |
B8656 |
9/24/2007 |
Clinical |
DP23, nail scraping |
| FSSC 2-k |
B8622 |
10/8/2007 |
Clinical |
HP10, sinovial fluid |
| FSSC 2-k |
B8623 |
10/9/2007 |
Clinical |
HP10, sinovial fluid |
| FSSC 2-k |
B8624 |
10/11/2007 |
Clinical |
HP10, sinovial fluid |
| FSSC 2-t |
B8594 |
7/19/2006 |
Clinical |
HP03, lesion swab |
| FSSC 2-t |
B8595 |
7/19/2006 |
Clinical |
HP03, lesion swab |
| FSSC 2-t |
B8658 |
10/16/2007 |
Clinical |
DP33, skin scraping |
| FSSC 2-u |
B8652 |
9/17/2007 |
Clinical |
DP29, nail scraping |
| FSSC 2-u |
B8674 |
10/13/2008 |
Clinical |
DP48, nail scraping |
| FSSC 3+4 (100) |
B8677 |
12/19/2008 |
Clinical |
DP51, skin scraping |
| FSSC 3+4 (100) |
B8636 |
1/29/2009 |
Clinical |
HP16, corneal ulcer swab |
| FSSC 5 (99.5) |
B8676 |
10/17/2008 |
Clinical |
DP50, nail scraping |
| FSSC 7 (99.7) |
B8634 |
1/5/2008 |
Clinical |
HP15, blood |
| FSSC 7 (99.7) |
B8635 |
1/5/2008 |
Clinical |
HP15, blood |
| FOSC† (100) |
B8698 |
11/1/2006 |
Environmental |
BR03, shower swab |
| FOSC† (100) |
B8660 |
10/26/2007 |
Clinical |
DP34, skin scraping |
| FOSC† (99.7) |
B8667 |
3/27/2008 |
Clinical |
DP41, nail scraping |
| FOSC† (100) |
B8672 |
8/18/2008 |
Clinical |
DP46, nail scraping |
| FOSC† (99.9) |
B8633 |
12/18/2008 |
Clinical |
HP15, skin scraping |
| FOSC 33 (100) |
B8699 |
11/1/2006 |
Environmental |
BR03, wall swab |
| FOSC 33 (100) |
B8701 |
11/1/2006 |
Environmental |
BR03, sink swab |
| FOSC 33 (100) |
B8702 |
11/1/2006 |
Environmental |
BR03, sink swab |
| FOSC 33 (100) |
B8691 |
9/21/2006 |
Environmental |
BR10, sink swab |
| FOSC 33 (100) |
B8695 |
10/5/2006 |
Environmental |
BR11, sink swab |
| FOSC 33 (100) |
B8713 |
7/31/2007 |
Environmental |
BR06, wall swab |
| FOSC 33 (100) |
B8719 |
8/14/2007 |
Environmental |
BR04, sink swab |
| FOSC 33 (100) |
B8722 |
8/15/2007 |
Environmental |
Nephrology, wall swab |
| FOSC 33 (100) |
B8723 |
8/27/2007 |
Environmental |
BR01, sink swab |
| FOSC 33 (100) |
B8724 |
8/27/2007 |
Environmental |
BR01, faucet swab |
| FOSC 33 (100) |
B8726 |
8/27/2007 |
Environmental |
BR02, sink swab |
| FOSC 33 (100) |
B8727 |
8/27/2007 |
Environmental |
BR02, water |
| FOSC 33 (100) |
B8729 |
8/31/2007 |
Environmental |
BR05, sink swab |
| FOSC 33 (100) |
B8730 |
8/31/2007 |
Environmental |
BR05, sink swab |
| FOSC 33 (100) |
B8731 |
10/16/2007 |
Environmental |
BR08, sink swab |
| FOSC 33 (100) |
B8732 |
10/16/2007 |
Environmental |
BR08, sink swab |
| FOSC 33 (100) |
B8733 |
10/19/2007 |
Environmental |
BR09, shower swab |
| FOSC 33 (100) |
B8734 |
10/19/2007 |
Environmental |
BR09, shower swab |
| FOSC 33 (100) |
B8735 |
10/19/2007 |
Environmental |
BR09, shower swab |
| FOSC 33 (100) |
B8736 |
10/19/2007 |
Environmental |
BR09, wall swab |
| FOSC 33 (100) |
B8737 |
10/19/2007 |
Environmental |
BR09, sink swab |
| FOSC 33 (100) |
B8739 |
10/23/2007 |
Environmental |
BR10, sink swab |
| FOSC 33 (100) |
B8740 |
10/23/2007 |
Environmental |
BR11, wall swab |
| FOSC 33 (100) |
B8629 |
10/24/2008 |
Clinical |
HP13, blood |
| FOSC 33 (100) |
B8742 |
10/25/2007 |
Environmental |
BR12, sink swab |
| FOSC 33 (100) |
B8743 |
10/25/2007 |
Environmental |
BR12, shower swab |
| FOSC 33 (100) |
B8746 |
10/26/2007 |
Environmental |
BR01, water |
| FOSC 33 (100) |
B8747 |
10/26/2007 |
Environmental |
BR02, water |
| FOSC 33 (100) |
B8748 |
10/26/2007 |
Environmental |
BR02, water |
| FOSC 33 (100) |
B8630 |
10/30/2008 |
Clinical |
HP13, catheter tip |
| FOSC 33 (100) |
B8752 |
10/31/2007 |
Environmental |
BR07, water |
| FOSC 33 (100) |
B8756 |
7/6/2009 |
Environmental |
BR06, sink swab |
| FOSC 33 (100) |
B8758 |
7/6/2009 |
Environmental |
BR03, sink swab |
| FOSC 33 (100) |
B8762 |
7/27/2009 |
Environmental |
BR06, sink swab |
| FOSC 183 (100) |
B8751 |
10/31/2007 |
Environmental |
BR02, water |
| FIESC† (98) |
B8709 |
8/7/2007 |
Environmental |
BR04, air |
| FIESC 15 (100) |
B8689 |
6/30/2005 |
Environmental |
BR06, air |
| FIESC 15 (100) |
B8703 |
1/29/2007 |
Environmental |
ICU, air (control) |
| FIESC 15 (100) |
B8704 |
1/29/2007 |
Environmental |
ICU, air (control) |
| FIESC 15 (100) |
B8705 |
6/13/2007 |
Environmental |
ICU, air (control) |
| FIESC 15 (99.5) |
B8706 |
6/13/2007 |
Environmental |
ICU, air (control) |
| FIESC 15 (100) |
B8753 |
4/30/2009 |
Environmental |
ICU, air (control) |
| FIESC 15 (100) |
B8755 |
4/30/2009 |
Environmental |
ICU, air (control) |
| FIESC 17 (100) |
B8708 |
6/18/2007 |
Environmental |
Pediatrics, air (control) |
| FIESC 20 (100) |
B8707 |
6/18/2007 |
Environmental |
Pediatrics, air (control) |
| FIESC 20 (100) |
B8759 |
7/6/2009 |
Environmental |
BR03, air |
| GFSC (94.1) |
B8627 |
4/18/2008 |
Clinical |
HP12, blood |
| GFSC (94.1) | B8628 | 4/18/2008 | Clinical | HP12, blood |
† Species identity not determined due to multiple genetic matches.
Note: Each isolate was given a unique isolate number. Isolate sources have designations as follows: BR (bathroom), HP (hematology patient), DP (dermatology patient), followed by a source number. In many cases, more than one isolate was collected from the same source.
Abbreviations: FSSC, Fusarium solani species complex;FOSC, Fusarium oxysporum species complex; FIESC, Fusarium incarnatum equiseti species complex; GFSC, Gibberella fujikuroi species complex.