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. 2013 Feb 8;138(6):064102. doi: 10.1063/1.4790160

Table 1.

Summary of all simulations reported in this work.

Simulation Simulation time (ns) Temperatures (K) Number of replicas Size of the simulation box (nm) Replica exchange probability (%)
Alanine decapeptide (A10) in explicit solvent 126 300–600 44 3.7 23–43
A10 in all implicit solvent models 80 250–600 12 8 28–52
Alanine polypeptide with 25 residues (A25) in explicit solvent 400 300–600 80 5.6 25–45
A25 using model M6/5 200 280–600 24 11.56 55–67
8 chains of peptide with 6 residues 1000 260–500 24 15 41–60
8 chains of peptide with 4 residues 1000 250–500 24 15 35–64