Table 1.
Simulation | Simulation time (ns) | Temperatures (K) | Number of replicas | Size of the simulation box (nm) | Replica exchange probability (%) |
---|---|---|---|---|---|
Alanine decapeptide (A10) in explicit solvent | 126 | 300–600 | 44 | 3.7 | 23–43 |
A10 in all implicit solvent models | 80 | 250–600 | 12 | 8 | 28–52 |
Alanine polypeptide with 25 residues (A25) in explicit solvent | 400 | 300–600 | 80 | 5.6 | 25–45 |
A25 using model M6/5 | 200 | 280–600 | 24 | 11.56 | 55–67 |
8 chains of peptide with 6 residues | 1000 | 260–500 | 24 | 15 | 41–60 |
8 chains of peptide with 4 residues | 1000 | 250–500 | 24 | 15 | 35–64 |